Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq2 89.7 4e-13 >seq1 Length=219802468 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| |||||||| | |||||||| |||| || ||| | || ||| Sbjct 160683829 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCC 160683770 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| || || ||||| | ||||| || | || | |||||||| || | Sbjct 160683769 AGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGG 160683710 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| |||||| | | ||| || || | || || || || Sbjct 160683709 ATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTC 160683650 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || || |||||||||||||| || ||||| ||||| Sbjct 160683649 CCAGTGAGAGTTTTCACAAATATCTGCATGTTCTT 160683615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| ||||| || | ||| || || |||| || | | | || ||| Sbjct 160684285 ACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCTTCC 160684226 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 ||||||||||| ||||| ||||||| ||||||||| | || | ||||| || || | Sbjct 160684225 AATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 160684166 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | || || | ||| ||||| | | ||| || || | || || || || Sbjct 160684165 ATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGTCTTC 160684106 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || |||||||| |||||||| Sbjct 160684105 CCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 >seq2 Length=179946965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| ||||| || | ||||||||| |||| || | | || ||| Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 ||||||||||| ||||| ||||||| |||||||| | || | ||||| || || | Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || | ||||| | ||| || |||| || ||| || || | || || || || Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || |||||||| || ||||| Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| |||||||| | || || || |||| || || | || ||| Sbjct 133019203 ACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTCC 133019144 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||||||||| | ||||| || | || | |||||||| || ||| Sbjct 133019143 AGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATC-CTG 133019085 Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 || | || || | ||| || || | | ||| || |||| || || || || Sbjct 133019084 AATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTT 133019025 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || || |||||||||||||| || ||||| |||| Sbjct 133019024 CCCAGTGAGAGTTTTCACAAATATCTGCATGTTCT 133018990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380867468881914