Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 125 1e-23 seq3 125 1e-23 seq12 114 2e-20 seq10 114 2e-20 seq11 100 4e-16 seq9 96.9 5e-15 >seq4 Length=159726490 Score = 125 bits (138), Expect = 1e-23 Identities = 111/136 (82%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 72079 ||| ||||||||||||||||| || ||||| | || ||| |||||||| |||| ||| | Sbjct 158380756 TACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCT 158380814 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 ||||||| ||||| ||||||||||| || || ||||| | | | |||| ||||||| | Sbjct 158380815 GCTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAG 158380874 Query 72140 GTTCCAAGTATATGGC 72155 |||||| ||||||||| Sbjct 158380875 GTTCCAGGTATATGGC 158380890 Score = 125 bits (138), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||||| ||| ||||| |||||||| | || || || ||||| | || || |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| |||||||||| ||| || ||||||||| | || |||||||| || |||| Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| ||||| |||||| | || | || || || || ||||||| |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || || || ||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || |||||||| |||| ||||||||||| || ||||| |||||||| |||| | | Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 71262 ACTATTTCTAAGACCATGT 71280 ||| || || | |||||| Sbjct 158378142 ACTGTTCCTGATGCCATGT 158378160 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 ||||| |||| || || ||||| || | | ||| |||||||| || | || | || Sbjct 158378814 ATCCTTCATACGTTTCATATGGACCAAGCTCCTTGGCCAGTTCACAGCTAGATTCCAGTG 158378873 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||||||||||||| || || || | |||||| || ||| || | | || |||| Sbjct 158378874 CAGCATAATAAATGGTCTCAAATATTTGCTTATTTAGCATTTGAGCCTTCTCACTCTCAA 158378933 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 |||| || | | ||| ||||| || ||||| | || || || ||||| |||||||| | Sbjct 158378934 ATGGGTATCTCATGAGGATAAAAGCATCTGCCAGGCCCTGCACCCCAATCCCGATAGGCC 158378993 Query 71555 TGTGTCTCTTATTAGAAATTTCAGC 71579 ||| |||| || ||| ||| || Sbjct 158378994 GGTGCTTCTTGTTGGAATATTCTGC 158379018 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 ||| || ||||| || ||||| || || ||||| || | || || ||||| ||||| Sbjct 158379691 AATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCG 158379750 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||| || ||||||||||| || ||| | ||||| ||||| ||| |||| || |||||||| Sbjct 158379751 GTTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAAT 158379810 Query 71871 CGCTTTCCAGAC 71882 || | ||| || Sbjct 158379811 GGCATACCATAC 158379822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||||||||| ||||| ||||||||||| |||| |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || || ||||| | || ||||| || |||||| || || | || | ||| | | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 72538 ATATGCTGAGGTCTTTCA 72555 || || || || | |||| Sbjct 158382346 ATGTGTTGTGGCCGTTCA 158382363 >seq3 Length=181146889 Score = 125 bits (138), Expect = 1e-23 Identities = 111/136 (82%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 72079 ||| |||||||||||||||||||| ||||| | || ||| |||||||| |||| ||| | Sbjct 172428927 TACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCT 172428869 Query 72080 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 72139 ||||||| ||||| || |||||||| || || ||||| | | | |||| ||||||||| Sbjct 172428868 GCTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACG 172428809 Query 72140 GTTCCAAGTATATGGC 72155 |||||| |||||||| Sbjct 172428808 GTTCCAGATATATGGC 172428793 Score = 116 bits (128), Expect = 5e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||||||| ||| |||||||||||||| || || || || |||| | || || |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||||||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 71375 ATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATG 71434 ||||| ||||||| |||||||| || | || ||| |||||||| || | || |||| Sbjct 172438160 ATCCTTCATATGTTTCGTATGGACCAAGCTCTTTGGCCAGTTCACAGCTAGATTCCAATG 172438101 Query 71435 CTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAA 71494 | ||||||||||||| || || || | ||||| | ||| || | | || |||| Sbjct 172438100 CAGCATAATAAATGGTCTCAAATATTTGTTTATTTAACATTTGAGCCTTCTCACTCTCAA 172438041 Query 71495 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTC 71554 |||| || | | ||| || || || ||||| | || || || ||||| || ||||| | Sbjct 172438040 ATGGGTATCTCATGAGGATGAAAGCATCTGCCAGGCCCTGCACCCCAATCCCAATAGGCC 172437981 Query 71555 TGTGTCTCTTATTAGAAATTTCAGC 71579 ||| |||| || ||| ||| || Sbjct 172437980 GGTGCTTCTTGTTGGAATATTCTGC 172437956 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 || |||||||| |||| ||||||||||| || || || ||||| || || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGC 172440349 >seq12 Length=128359586 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| || ||||| ||||| |||||||||||||| ||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 42207 CAATAAGTCTCTCTCC 42222 | | | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq10 Length=136570856 Score = 114 bits (126), Expect = 2e-20 Identities = 118/153 (77%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 41719 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATTT 41774 ||| |||||| |||| | | |||| ||||||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | |||||||| || || || || ||||| |||||||||||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAA 41867 ||||||| ||||| ||||| || | ||| ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTAAAAA 119053552 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATG 42621 ||| || || | ||||| ||||| |||||||| || || ||||| | |||||| ||||| Sbjct 119050097 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 119050038 Query 42622 ATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 |||||| || ||||| || |||||||||| |||||| Sbjct 119050037 ATATTGGATGGGGAAGATCACAAATCTATGTGGATT 119050002 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||||||| || || || | ||| || ||||||||||||||||| || || || || Sbjct 119051263 ATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGC 119051204 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAA 42438 || || || || || || || | ||||| ||||| || |||||| | | ||| Sbjct 119051203 AATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTCTTTGCTAAA 119051150 >seq11 Length=155008753 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| |||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| || ||||| || || |||||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 42207 CAATAAGTCTCTC 42219 | | | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq9 Length=159361991 Score = 96.9 bits (106), Expect = 5e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774 ||||||||||| | || | | ||| || |||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 | ||||||||||| || | || || || || ||||||||||||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 41835 CCATGAAATCAAACGGATT 41853 ||||||| ||||| ||||| Sbjct 138029295 CCATGAAGTCAAATGGATT 138029277 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 41773 ||||||||||| ||| || || || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||||||||| || || || || ||||| ||||||||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 41834 TCCATGAAATCAAACGGATT 41853 |||||||| ||||| ||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 ||| |||| |||||| || |||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || ||||| || || || || | ||||||| || || ||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670232885235080