Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 122 9e-23 seq3 98.7 1e-15 seq2 98.7 1e-15 >seq1 Length=219802468 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||| || | || ||||||||||| |||||||| || Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || ||||||||| | |||| | |||||||| ||||| Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| ||||| | ||| | ||||| | ||||| ||| Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACT 160684352 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || || || || || || ||||| ||||| Sbjct 160684351 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||| || | || || ||||| || || ||||| || | Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| ||||||||| | |||| | ||||| || || || Sbjct 160684927 AGGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160684868 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| ||||| | ||| | ||||| | ||||| ||| Sbjct 160684867 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACT 160684808 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || || || || || ||||||||||| Sbjct 160684807 TCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||| || | || || |||||||| ||||||||||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || |||||| | |||| | || ||||| || || Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| || | | || | ||||| | ||||| ||| Sbjct 160685095 ATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACT 160685036 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||| ||||||| |||||| || ||||| ||||| Sbjct 160685035 TCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||| | ||| || || | || ||||| ||||| ||||||||||| | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || || ||||| ||||| |||||| | ||| || || || || Sbjct 160683787 AGGGTTCGTCCA-TCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGG 160683729 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||||| ||| | | || | ||||| | || || || Sbjct 160683728 AATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAAC 160683669 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | ||||| || || | ||||| || ||||| ||||| Sbjct 160683668 TTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 160683621 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||| || | || || ||||| || |||||||| || | Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| || || ||||||||| | |||| | ||||| || || || Sbjct 160684015 AGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160683956 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| |||| | || | ||||| | || || || Sbjct 160683955 ATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACC 160683896 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || |||| || || || ||||| ||||| Sbjct 160683895 TCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | ||| | || || || | |||||||| || || || || || || Sbjct 160684304 GCCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGA 160684245 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || || ||||| | |||||| |||||| | |||| | || ||||| || || Sbjct 160684244 CAGGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGG 160684185 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| ||||| |||| | || | ||||| | || || || Sbjct 160684184 AATGCCTTCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAAC 160684125 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | ||||| || |||| || || || ||||||||||| Sbjct 160684124 TTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 >seq3 Length=181146889 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || ||||| || | | |||| | ||||| || || || ||| Sbjct 29377060 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 29377119 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | || || || ||||| ||||||||||| || ||| ||| ||| Sbjct 29377120 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTC 29377179 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | || ||||| || | || | |||||||| ||||| ||| Sbjct 29377180 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTT 29377239 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| || ||||| Sbjct 29377240 TTTACGAAGATCTGCAT 29377256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| ||||| || || ||||| || | | |||| ||||| || || || || Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||| || || ||||| |||||||||||||| ||| ||| ||| Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | ||||| || | || | |||||||| ||||| ||| Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662 Query 143168 TTTACGAATATTTGCAT 143184 ||||| || || ||||| Sbjct 29378663 TTTACAAAGATCTGCAT 29378679 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || ||||| || || || |||||||| | | |||| | ||||| || || Sbjct 29378932 ATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTG 29378991 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 || || ||| |||||| | ||||| || ||||| |||||||||||||| || || Sbjct 29378992 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTT 29379051 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 | ||| | | || | ||||| | || ||||| || | || | |||||||| || Sbjct 29379052 TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGT 29379111 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || || ||||| Sbjct 29379112 CAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || ||||| || | | |||| ||||| || || || || Sbjct 29378711 GTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCG 29378770 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | || || || ||||| |||||||||||||| ||| ||| ||| Sbjct 29378771 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378830 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | || ||||| || | || | |||||||| |||| ||| Sbjct 29378831 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTT 29378890 Query 143168 TTTACGAATATTTGCATA 143185 ||||| || || |||||| Sbjct 29378891 TTTACAAAGATCTGCATA 29378908 >seq2 Length=179946965 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || ||||| || || ||| || ||||| ||||| |||||| Sbjct 133020331 GTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCCAGTTGCTTACCA 133020272 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || | | ||||| || || || |||||||||||||| ||||| |||| Sbjct 133020271 GCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTT 133020212 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | ||||| || |||| || | ||||| || || ||||| Sbjct 133020211 ACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTCTTCCCAGTTAATGTC 133020152 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||||||||| Sbjct 133020151 TTGACAAATATTTGCAT 133020135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | |||||| || | || |||||||| || ||||| || || | Sbjct 133020133 CCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTGAC 133020074 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||| || |||||| | |||| | ||||| || || || Sbjct 133020073 AGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 133020014 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| || | | ||| | ||||| | || || ||| Sbjct 133020013 ATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACT 133019954 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || || || || || ||||||||||| Sbjct 133019953 TCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 82.4 bits (90), Expect = 8e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||| || | || | || |||||||| ||||||||||| || | |||| Sbjct 133020580 AAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGA 133020521 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||||| || || || |||||| |||||| | || || || ||||| || ||||| Sbjct 133020520 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCC 133020461 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 || || |||||| |||| | || | ||||| |||| || ||||||| || Sbjct 133020460 TTATCCTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTA 133020401 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | ||||| || || || || || || ||||| ||||| Sbjct 133020400 ATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506329721416560