Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 111 1e-19 >seq2 Length=179946965 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || ||||| ||||||||||| || | || |||| || | || ||| Sbjct 133020343 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCC 133020284 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || ||||| ||| |||| | ||||||||| || ||| | ||| |||||||| Sbjct 133020283 AGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGG 133020224 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| |||||| | | | || || | || || || | |||||| || || Sbjct 133020223 ATTTTGGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTCTTC 133020164 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || ||||| || |||||||| ||||||||| Sbjct 133020163 CCAGTTAATGTCTTGACAAATATTTGCATT 133020134 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | |||| ||||| || || ||||| |||||||||||||| | | Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || |||| ||||| || ||| | || | ||| || ||||| ||| Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| ||||| || || | | | |||||||| |||||| Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACC 133019270 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| || || ||||| || || || ||||| || ||||| Sbjct 133019269 TCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| || || || || || || || || || | || ||| | | || ||||| || Sbjct 133020110 GTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTGACAGGGTTCGGCCATCTTCCAGTTG 133020051 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| |||| | ||||||||| || ||| | || ||||| || |||||| Sbjct 133020050 CTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGAATTTT 133019991 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | || || | ||||| ||| | ||||||||||||||| || Sbjct 133019990 TGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACTTCAAGGGTAATGGTTTTACCAGT 133019931 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||| |||||||| Sbjct 133019930 TAAGGTCTTGACAAATATTTGCAT 133019907 >seq1 Length=219802468 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| || ||||| || ||||||||||| || | || ||| || | || || || || Sbjct 160684964 GTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGACAGGGTTCTGCCATCTTCTAGTTG 160684905 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||||| ||| |||| | ||||||||| || ||| | ||| |||||||| ||||| Sbjct 160684904 CTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTT 160684845 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | || || | || || ||| | ||||| |||||||| || Sbjct 160684844 TGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACTTCAAGAGTAATTGTTTTACCAGT 160684785 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||| |||||||| Sbjct 160684784 TAAGGTCTTGACAAATATTTGCAT 160684761 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| || || || |||||||| ||||| || | | || | | || |||||||| Sbjct 160684508 GTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTG 160684449 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||||| ||| |||| | |||||||||||| || | ||| |||||||| ||||| Sbjct 160684448 CTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATTTT 160684389 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 |||||| | | | || || | || || ||| | ||||||||| || || || Sbjct 160684388 TGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTCCCAGT 160684329 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||| || ||||| Sbjct 160684328 TAAGGTCTTGACAAATATCTGCAT 160684305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414026951816002