Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 seq2 89.7 3e-13 >seq1 Length=219802468 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/234 (70%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || || ||||| || |||||||| || |||||||| |||||| Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 33203 AAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 | | ||| || || | |||||| ||| ||| || || | |||||||| | Sbjct 160684927 A----GGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGG 160684872 Query 33259 GGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 ||| ||||||||||| || | | | || |||||| ||| ||| ||||| | || Sbjct 160684871 GGGAATGCCTTCTTTGTCTTGGATTTTTGC---TTTTACGTTTTCAATTGTGTCACTTGG 160684815 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| || ||||| || ||||| || || | || || || || |||||||| Sbjct 160684814 TTCAACTTCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | || || ||||| || ||||||||||| || ||||||||||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || | || |||| ||||| ||| ||| || || | || || || | ||| Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || | | ||| ||||| | |||| | Sbjct 160685095 ATGCCTTCTTTGTCTTGGATTTTTGCC---TTAACATTCTCAATGGTGTCACTTGGTTCA 160685039 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || || || || || || ||||| || || || ||||| Sbjct 160685038 ACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 84.2 bits (92), Expect = 1e-11 Identities = 159/233 (68%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || || | ||||| |||| || || || ||||| || |||||||| ||| Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | || || |||| || || ||| || || || | ||| ||||| | ||| Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | || ||| || | | ||| ||||| | || | | Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGC---TTTCACATTCTCAATTGTGTCACTTGGCTCA 160683671 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || || || || || || || |||||||| || || || |||||||| Sbjct 160683670 ACTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 >seq2 Length=179946965 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | ||||| |||| || || || || || |||||||| |||||| Sbjct 133020361 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGAC 133020302 Query 33203 AAATTGAGTTGG--TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | || || || |||| |||||| ||| ||| ||||| | |||||||| | || Sbjct 133020301 AG--TGTTCTGCCATCTTCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGG 133020244 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | ||||||||||| || | | | || |||||| ||| ||| ||||| | |||| Sbjct 133020243 GAATGCCTTCTTTGTCTTGGATTTTGGC---TTTTACATTTTCAATTGTGTCACTTGGTT 133020187 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || || || || || || || || | || || || || |||||||| Sbjct 133020186 CAACCTCAAGGGTAATTGTCTTCCCAGTTAATGTCTTGACAAATATTTGCAT 133020135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318357880775634