Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 7e-16 seq1 89.7 4e-13 >seq2 Length=179946965 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | ||||| || || ||| || |||||||| ||||| || Sbjct 133019221 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGAC 133019162 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| |||| ||||| || ||||| ||||||| ||| ||||| |||| Sbjct 133019161 AGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGA 133019102 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| || || | ||| |||||| ||||| || Sbjct 133019101 ATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACT 133019042 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || | || || || || || || | ||| ||||||||||| ||||||| Sbjct 133019041 TCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGT 133018993 Score = 98.7 bits (108), Expect = 7e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| ||| || || ||||| ||||| | |||||||| | || | |||||||| Sbjct 133020063 CATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTT 133020004 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 |||| ||||||| || || | ||| || || ||||| || || | |||| Sbjct 133020003 TATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACTTCAAGGGTAA 133019944 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||||||| ||||| ||||| |||||||||||||| Sbjct 133019943 TGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | ||||| || || ||| || || |||||||| ||||| Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | |||| ||||||||||| || ||||| ||||| | ||| || || | || Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||| || ||| ||||| ||||| | ||| |||||| ||||| || Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACC 133019270 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | |||||||| || || || || |||||||||||||| |||||| Sbjct 133019269 TCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCATG 133019222 >seq1 Length=219802468 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| || || ||||| ||||| | |||||||| | || | ||||||| Sbjct 160684917 CATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTT 160684858 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| ||| || | ||| || || || || || || | |||| Sbjct 160684857 TGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACTTCAAGAGTAA 160684798 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||| ||||| ||||| |||||||||||||| Sbjct 160684797 TTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||| || || || ||||| ||||| | |||||||| | || | |||||||| Sbjct 160684005 CATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTT 160683946 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| |||||| || || | ||| ||| || |||||||| || | |||| Sbjct 160683945 TGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAA 160683886 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||| || || || | |||||||||||||| ||||| Sbjct 160683885 TTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | ||||| || || ||| || |||||||| || ||||| Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | || |||| |||| ||||| || || || ||||||| ||| ||||| | || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| ||||| ||| || | ||| || || ||||| || Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACT 160683668 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || | || || || || || || | ||| ||||||||||| ||||||| Sbjct 160683667 TCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGT 160683619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354310481296884