Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 seq1 84.2 2e-11 >seq2 Length=179946965 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| || || || |||||||| || ||| | ||||||| Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | || |||||||| ||| | |||||| ||||| Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || ||||| ||| || || | ||||| || || Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || || ||||| || ||||| Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || || ||||| || || || ||||| || || ||| | ||||||| Sbjct 133020343 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCC 133020284 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | ||| || || ||| |||| | ||||| || || ||| | |||||||||||| Sbjct 133020283 AGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGG 133020224 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| ||| || | ||| | || | ||||| || | |||||| || || Sbjct 133020223 ATTTTGGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTCTTC 133020164 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || || |||||||| ||||||||| Sbjct 133020163 CCAGTTAATGTCTTGACAAATATTTGCATT 133020134 >seq1 Length=219802468 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| || || || || || || || ||| | ||||||| Sbjct 160684285 ACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCTTCC 160684226 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||||||||| ||| | || | ||||||||||| ||| | |||||| ||||| Sbjct 160684225 AATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 160684166 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 ||||| || || | ||| || || | || || ||| | ||||| || || Sbjct 160684165 ATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGTCTTC 160684106 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || |||| || || ||||| |||||||| Sbjct 160684105 CCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419034749595273