Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq9 105 6e-18 seq12 102 7e-17 seq10 89.7 4e-13 >seq9 Length=159361991 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || ||||| || || || || || ||||| ||||||||||| | Sbjct 138039860 CTTCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCT 138039801 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| ||||| | |||||| ||||| || ||||| || |||||||| || ||||| | Sbjct 138039800 TCAGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGG 138039741 Query 13293 C 13293 | Sbjct 138039740 C 138039740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 12985 GTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTAC 13044 ||| |||||||| || || ||||| ||||||||| ||| |||||||| || | ||||| Sbjct 138028432 GTCTGCAACAAATTCAATATACTGCTTCATTAAAGTACAATTCATTCCAATGAGATTTAC 138028373 Query 13045 AGGCATAGCTTCTGTTAAAAA 13065 ||||| |||||||||||| || Sbjct 138028372 AGGCAAAGCTTCTGTTAAGAA 138028352 >seq12 Length=128359586 Score = 102 bits (112), Expect = 7e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || |||||||| ||||| || || || ||||| || || | ||| || Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 | ||| || || |||||||| || || || || ||||||||||| ||||| ||||| || Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGC 109014909 >seq10 Length=136570856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||| || || || | | ||| |||||||||||||||||||| ||||| || ||||| Sbjct 119051257 AACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGCAATTTG 119051198 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| |||||||| || | |||||||| || || ||||| Sbjct 119051197 GAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTC 119051159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||| || || ||||| | |||| | || ||||||||||| || ||| Sbjct 119053663 TTGGACATAACACCCATCTTCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTT 119053604 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT 12940 ||||| || || || |||||||| || || || |||||| Sbjct 119053603 CCTTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTT 119053565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430414946080266