Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq11 105 5e-18 >seq11 Length=155008753 Score = 105 bits (116), Expect = 5e-18 Identities = 129/175 (74%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || || |||| ||| |||||||| ||||| | ||| || |||||||||||||| || Sbjct 107958869 CCAGTGACGTGAGCAATCATGTAAGTGAGTAAGGCGTAACTAGCGATGTTAAAGGGCACT 107958928 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCAC 25613 || | ||||||| | || || |||||||| ||||| ||||| | ||||| ||| || Sbjct 107958929 CCCAGGCCCATGT-CTCCTGATCTCTGGTACAGCTGGCACGATAACTCTTTGTCAACTAC 107958987 Query 25614 GTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTA 25668 ||| ||||| || | |||| || || || ||||| ||||| | ||||||| Sbjct 107958988 GTAGAACTGGCAGAGAGTGTGACAAGGCGGCAGAGCCATAAGAGAAATGTCTTTA 107959042 Score = 96.9 bits (106), Expect = 2e-15 Identities = 116/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| || || || || | ||||||||| || || ||||||||||| || ||||| || | Sbjct 107960644 TGTATTCAGCACCAAAGTGCCTCCACTGAAAACCATACACCGGTCCAAGATCTCCTTCCT 107960703 Query 25841 CCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATC 25899 | ||| | | | || || ||| |||||||| || | ||| ||||| || ||||| ||| Sbjct 107960704 CTCTG-GTTGAGAATCCTTGCTTGTCCAAAAATTCCCGGGAGCCATTTGCATCCCAAATC 107960762 Query 25900 TTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 25934 ||||| || || | || || ||||| ||||| || Sbjct 107960763 TTTACGCCTTTTGCAGAAAGTTCTTTTGAGTTGGT 107960797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339689757084909