Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 6e-15 seq5 93.3 2e-14 seq20 89.7 3e-13 seq8 84.2 1e-11 seq17293 82.4 4e-11 seq772 82.4 4e-11 seq16 82.4 4e-11 seq15 82.4 4e-11 >seq7 Length=144084680 Score = 95.1 bits (104), Expect = 6e-15 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || ||| |||||| ||| |||||| | |||||||||| ||||||| ||||||||| Sbjct 28136780 AACTAAAAAAAAAACAAGTTGGCCAGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 28136839 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||| |||||||||||||| |||| || Sbjct 28136840 GCACCACGCTCTAACCAACTGAGCTAACCGGCCATC 28136875 >seq5 Length=144167370 Score = 93.3 bits (102), Expect = 2e-14 Identities = 89/111 (80%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| |||| ||| ||||||| | |||||||||| ||||||| |||||||||||| Sbjct 136180054 AATACAAAACAAAAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 136180113 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGT-GATTTTT 11548 | ||||||| |||||||||||||| |||| || || | |||| | ||||| Sbjct 136180114 CCACGCTCTAACCAACTGAGCTAACCGGCCAGTTGAAGCTTGTAGCTTTTT 136180164 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 136170080 AAAAAAAAAAAAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 136170021 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 136170020 CACGCTCTAACCAACTGAGCTAACCGGCC 136169992 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 136170519 AAAAAAAAAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 136170460 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 136170459 GCTCTAACCAACTGAGCTAACCGGCC 136170434 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| || |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 136169629 AAAAAAAAAT--AAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 136169572 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 136169571 CACGCTCTAACCAACTGAGCTAACCGGCC 136169543 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 136172090 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 136172031 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 136172030 CTGAGCTAACCGGCC 136172016 Score = 84.2 bits (92), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||| | ||||||||||| ||||||| ||||||||||||| || Sbjct 136174752 AAAAAAGCAC-TTGGCCCGTACGAGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 136174810 Query 11504 GCTCTRACCAACTGAGCTAA 11523 |||| |||||||||||||| Sbjct 136174811 ACTCTAACCAACTGAGCTAA 136174830 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 85546696 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 85546637 Query 11528 CC 11529 || Sbjct 85546636 CC 85546635 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 136176621 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 136176680 Query 11528 CC 11529 || Sbjct 136176681 CC 136176682 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 136180775 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 136180834 Query 11528 CC 11529 || Sbjct 136180835 CC 136180836 >seq20 Length=8165045 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| || ||||||| | |||||||||| ||||||| |||||||||||| Sbjct 3972932 TAATGAAAAAACAC-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 3972874 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 3972873 CCACGCTCTAACCAACTGAGCTAACCGGCC 3972844 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 3971345 AACAAAAAA--AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 3971288 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 3971287 CACGCTCTAACCAACTGAGCTAACCGGCC 3971259 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 3971682 AAAAAAAAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 3971623 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 3971622 CTCTAACCAACTGAGCTAACCGGCC 3971598 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || || |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 3972040 AAAATATTGAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 3971981 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 3971980 GCTCTAACCAACTGAGCTAACCGGCC 3971955 Score = 86.0 bits (94), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11443 TAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||| |||| ||||||| | |||| ||||| ||||||| ||||||||||||| Sbjct 3982837 TACAAAACCAAACTTGGCCCGTACGGGGATGGAACCCGCGACCTTGGCGTTATTAGCACC 3982896 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 3982897 ACGCTCTAACCAACTGAGCTAACCGGCC 3982924 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| |||| || ||||||| | |||||||||| ||||||| |||||||||||| Sbjct 3974296 TAATGGAAAAACAC-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 3974354 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 3974355 CCACGCTCTAACCAACTGAGCTAACCGGCC 3974384 Score = 84.2 bits (92), Expect = 1e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| | || |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 3976491 AAAAGTACAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 3976550 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 3976551 CTCTAACCAACTGAGCTAACCGGCC 3976575 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3981802 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3981861 Query 11528 CC 11529 || Sbjct 3981862 CC 3981863 >seq8 Length=121245977 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| || | || |||||| | |||||| | |||||||||| ||||||| || Sbjct 936655 AATACAGTAAAAAAAAAAAAAACACTTGGCCAGTACGGGGATCGAACCCGCGACCTTGGC 936714 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||| |||||||||||||| |||| Sbjct 936715 GTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 936754 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1388 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1447 Query 11528 CC 11529 || Sbjct 1448 CC 1449 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1149521 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1149462 Query 11528 CC 11529 || Sbjct 1149461 CC 1149460 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1340173 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1340232 Query 11528 CC 11529 || Sbjct 1340233 CC 1340234 >seq17293 Length=771 Score = 82.4 bits (90), Expect = 4e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| || ||||| ||||||||||||| ||||||| ||||| Sbjct 435 TTGGCCCGTACGGGGATCGAACCCTCAACCTTGGCGTTATTAGCACCACGCTCTAACCAA 376 Query 11515 CTGAGCTAA 11523 ||||||||| Sbjct 375 CTGAGCTAA 367 >seq772 Length=4700 Score = 82.4 bits (90), Expect = 4e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 4568 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAGCCA 4509 Query 11514 ACTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 4508 ACTGAGCTAACCGGCCG 4492 >seq16 Length=98932710 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 11593333 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 11593392 Query 11528 CC 11529 || Sbjct 11593393 CC 11593394 >seq15 Length=120101378 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 73931436 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 73931377 Query 11528 CC 11529 || Sbjct 73931376 CC 73931375 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261146907039508