Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq7 116 5e-21 seq8 111 2e-19 >seq7 Length=144084680 Score = 116 bits (128), Expect = 5e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| |||||| |||||| |||||||||||||||||||| | || || || ||| || Sbjct 111936471 CAAAACCCACGCTTCCGCCAAAGGTGCTGGGTTTCCAGTATTCAGGAGAACATATGGGGT 111936412 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||| |||||||| || || || ||||| |||| ||| | ||| |||| || || | Sbjct 111936411 TTCCCATCAGGCCTTTTAGAGAGAATGGAGCTCCCATCTCTACCATGGTCTCTCCAAAAA 111936352 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 | || ||| || |||| |||||| | | ||| | || | |||| || || || | Sbjct 111936351 TAGCTCCGGGGCGAGGCTGTTCCACAAGTAGTCCCGGATAAAGTTCCATGGCATCAATAT 111936292 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | ||||| || | | ||| || | |||||||| |||||| Sbjct 111936291 CACCGTATAGTTTCTCAAATTCAGCTGACATTTCCTTCTCTCCT 111936248 Score = 100 bits (110), Expect = 4e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 9649 TCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTG 9708 ||||| |||||||||||| |||| |||| || || |||| ||||| |||| Sbjct 111934157 TCGTCGTCCCATTCTGGATGCTCTCCAGCAAGAATGTCACAAACTCGATTGTGCTCCCGT 111934098 Query 9709 AGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACA 9768 | |||||| || | |||||||| || ||||| || ||||||||| | ||||| || ||| Sbjct 111934097 AACCAGATTGTGGAATACATCATCAGCCCAGGAACAAGGCCAAAAACTTCTTGCCCAACA 111934038 Query 9769 GCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATC--ATGTGCACCTGGACATCTT 9826 || | | | || ||| || || | ||| || || ||| || | | |||| || || Sbjct 111934037 GCAAACTGAAGATGTTCTGGAACATGGGGTGGGTACATCATATCTACTCCTG--CACTTT 111933980 Query 9827 TGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864 | || | || || |||||||| || || || |||||| Sbjct 111933979 TCACTGTTGGTGGGTACATTTCCCCATCTATCATCTGA 111933942 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || | | |||| |||||||| | ||| |||| ||| || | || Sbjct 111933511 CTTACCCCATGGCCTAATGCTTTGGTGAAGGCGGCTCCTTTTGCCATATCCGTTTTGAAG 111933452 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| ||||| |||| || |||||||| | |||||||| || || || Sbjct 111933451 AACTGGTGTGTGAAGTGTTGCGCAAAGAAAGCAAACATCACATTGGTGCCTTGAGGGTCA 111933392 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| | || | || || | || ||||||||| || Sbjct 111933391 GGAATAAATTTTCTTCGCATCAGGAATTTTTCCACCAC 111933354 >seq8 Length=121245977 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 ||||||||||| |||||| ||||| || ||||||||||| | || ||||| ||| | Sbjct 92245629 CAAACCCCACGCTTCCGCCAAAGGTACTAGGTTTCCAGTATTCAGGAGAGCATATGGGAT 92245570 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||| |||||||| || || || ||||| |||| ||| | || |||| || || | Sbjct 92245569 TTCCCATTAGGCCTTTTAGAGAGAATGGAGCTCCCATCTCTACCATTGTCTCTCCAAAAA 92245510 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGATG 8929 | || || || |||| ||||| |||||| ||| | || | ||||| || || || Sbjct 92245509 TAGCTCCAGGGCGCGGCTGTTCCA-CAAGAAGTCCAGGATAGAGCTCCATGGCATCAATA 92245451 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||| || | ||||| || | ||||| || |||||| Sbjct 92245450 TCACCGTATAGTTTCTCAAGTTCAGCTGACATTTCTTTCTCTCCT 92245406 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 ||||||||||| || | | |||| |||||||| | ||| |||| ||| || | || Sbjct 92242915 CTTACCCCATGGCCTAATGCTTTGGTGAAGGCAGCCCCTTTTGCCATATCCGTTTTGAAG 92242856 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| ||||| ||||| |||| || |||||||| | ||||||||| || || || Sbjct 92242855 AACTGGTGTGTGAAGTGTTGAGCAAAGAAAGCAAACATAACGTTGGTGCCTTGAGGGTCA 92242796 Query 10149 GGA 10151 ||| Sbjct 92242795 GGA 92242793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707567999253520