Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq9 105 7e-18
seq10 102 9e-17
>seq9
Length=159361991
Score = 105 bits (116), Expect = 7e-18
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183
||||||||| ||||| || | || |||| ||||||| | |||||||| | |||||
Sbjct 138029417 TATTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCAT 138029358
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
|| || || |||| |||||| || || || || || |||||||||||||| || ||
Sbjct 138029357 CTTCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTT 138029298
Query 21244 TTCCATAAAATCAAATGGATT 21264
|||||| || |||||||||||
Sbjct 138029297 TTCCATGAAGTCAAATGGATT 138029277
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
||||||| || || || | ||||||||| || || | || ||||| | ||| | || |
Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
| | |||||| || || ||||||| || || ||||| || || ||||| ||||||||||
Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305
Query 21618 CAACTAATCGTTCACC 21633
| || | |||||||||
Sbjct 138027304 CCACCACTCGTTCACC 138027289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183
||||||||| ||||||| || | ||| ||| || || | ||| | |||||
Sbjct 138044456 TATTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTGGCCATGACACCCAT 138044397
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
|| || || |||| |||| | || || || ||||| ||||||||||| || || ||
Sbjct 138044396 CTTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTT 138044337
Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279
|||||| || ||||||||||| ||||| ||||| ||
Sbjct 138044336 TTCCATGAAGTCAAATGGATTCTCAGACTTAAAAAT 138044301
>seq10
Length=136570856
Score = 102 bits (112), Expect = 9e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
||||||| || || || | ||||||||| || || | || ||||| | || | || |
Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
| | |||||| || || ||||||| || || |||||||| || ||||| ||||||||||
Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046
Query 21618 CAACTAATCGTTCACC 21633
|||| | |||||||||
Sbjct 119052045 CAACAACTCGTTCACC 119052030
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183
|| ||| || |||||||| | || ||| || |||| | || ||||||| |||||
Sbjct 119053706 TACTTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTGGACATAACACCCAT 119053647
Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243
|| || || || | |||| | || || ||||| || ||||||||||||||||| ||
Sbjct 119053646 CTTCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTT 119053587
Query 21244 TTCCATAAAATCAAATGGATTT 21265
|||||| || ||||||||||||
Sbjct 119053586 TTCCATGAAGTCAAATGGATTT 119053565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531182514510920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |