Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9 105 7e-18 seq10 102 9e-17 >seq9 Length=159361991 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183 ||||||||| ||||| || | || |||| ||||||| | |||||||| | ||||| Sbjct 138029417 TATTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCAT 138029358 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 || || || |||| |||||| || || || || || |||||||||||||| || || Sbjct 138029357 CTTCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTT 138029298 Query 21244 TTCCATAAAATCAAATGGATT 21264 |||||| || ||||||||||| Sbjct 138029297 TTCCATGAAGTCAAATGGATT 138029277 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | ||||||||| || || | || ||||| | ||| | || | Sbjct 138027424 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCT 138027365 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | |||||| || || ||||||| || || ||||| || || ||||| |||||||||| Sbjct 138027364 TCAGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATG 138027305 Query 21618 CAACTAATCGTTCACC 21633 | || | ||||||||| Sbjct 138027304 CCACCACTCGTTCACC 138027289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183 ||||||||| ||||||| || | ||| ||| || || | ||| | ||||| Sbjct 138044456 TATTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTGGCCATGACACCCAT 138044397 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 || || || |||| |||| | || || || ||||| ||||||||||| || || || Sbjct 138044396 CTTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTT 138044337 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATAT 21279 |||||| || ||||||||||| ||||| ||||| || Sbjct 138044336 TTCCATGAAGTCAAATGGATTCTCAGACTTAAAAAT 138044301 >seq10 Length=136570856 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | ||||||||| || || | || ||||| | || | || | Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | |||||| || || ||||||| || || |||||||| || ||||| |||||||||| Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046 Query 21618 CAACTAATCGTTCACC 21633 |||| | ||||||||| Sbjct 119052045 CAACAACTCGTTCACC 119052030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21124 TATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCAT 21183 || ||| || |||||||| | || ||| || |||| | || ||||||| ||||| Sbjct 119053706 TACTTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTGGACATAACACCCAT 119053647 Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 || || || || | |||| | || || ||||| || ||||||||||||||||| || Sbjct 119053646 CTTCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTT 119053587 Query 21244 TTCCATAAAATCAAATGGATTT 21265 |||||| || |||||||||||| Sbjct 119053586 TTCCATGAAGTCAAATGGATTT 119053565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531182514510920