Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 125 9e-24 seq4 125 9e-24 seq3 122 1e-22 seq12 120 4e-22 seq11 109 7e-19 seq10 105 8e-18 >seq9 Length=159361991 Score = 125 bits (138), Expect = 9e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| ||||| |||||||| || || |||||||| ||||| || || || || || Sbjct 138039858 TCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCTTC 138039799 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 138039798 AGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 138039739 Query 33448 ATAAGTCTCTCTCC 33461 | ||| | ||| || Sbjct 138039738 ACAAGGCGCTCGCC 138039725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 33013 ||||||||||| | || | | ||| ||||||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | ||||||||||| || | || || || || ||||| ||||||||||| || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 33074 CCATGAAATCAAACGGATT 33092 ||||||| ||||| ||||| Sbjct 138029295 CCATGAAGTCAAATGGATT 138029277 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| | ||||| ||||| || ||||| || || ||||| | ||||||||||| Sbjct 138025045 TACCTCTTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 138024986 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||| ||||| || |||||||||| |||||| Sbjct 138024985 ATACTGGATGGGGAAGATCACAAATCTATGTGGATT 138024950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATT 33012 ||||||||||| ||| || || || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || ||||||||||| || || || || ||||| || |||||||| || || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 33073 TCCATGAAATCAAACGGATT 33092 |||||||| ||||| ||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| |||| ||| || || |||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || ||||| || || || || | | ||||||| | || ||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 >seq4 Length=159726490 Score = 125 bits (138), Expect = 9e-24 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||||| ||| ||||| |||||||| | || || || ||||| | || || |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 ||||||| || ||||||| ||| || ||||||||| | || |||||||| || |||| Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 |||| ||||| |||||| | || | || ||||| || ||||||| |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 || ||||||||||||||||| || ||||| | || ||| |||||||| |||| ||| || Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 158380815 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| ||||| ||||||||||| || || ||||| | | | |||| ||||||| || Sbjct 158380816 CTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGG 158380875 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCC 63363 ||||| ||||||||| | | ||||||| Sbjct 158380876 TTCCAGGTATATGGCAAATGCACCAGGCC 158380904 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || || || ||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || |||||||| |||| ||||||||||| || ||||| |||||||| |||| | || Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 62456 ACTATTTCT 62464 ||| || || Sbjct 158378142 ACTGTTCCT 158378150 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 ||||| |||| || || ||||| || || || || |||||||| || | || | || Sbjct 158378814 ATCCTTCATACGTTTCATATGGACCAAGCTCCTTGGCCAGTTCACAGCTAGATTCCAGTG 158378873 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 || | ||||||||||| || || || | ||||||||| ||| || | | || |||| Sbjct 158378874 CAGCATAATAAATGGTCTCAAATATTTGCTTATTTAGCATTTGAGCCTTCTCACTCTCAA 158378933 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 |||| || | | ||| ||||| || || || | || || || ||||| |||||||| | Sbjct 158378934 ATGGGTATCTCATGAGGATAAAAGCATCTGCCAGGCCCTGCACCCCAATCCCGATAGGCC 158378993 Query 62749 TATGTCTCTTATTAGA 62764 || |||| || || Sbjct 158378994 GGTGCTTCTTGTTGGA 158379009 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| || ||||| || || || || || | || || ||||| ||||| | Sbjct 158379692 ATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 158379751 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || ||||||||||| || || | ||||| ||||| ||| |||| || |||||||| Sbjct 158379752 TTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAATG 158379811 Query 63066 GCTTTCCAGAC 63076 || | ||| || Sbjct 158379812 GCATACCATAC 158379822 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | ||||||||||| ||||| ||||||||||| || | |||||| Sbjct 158382226 GTACCAGCATTGAACAGTGTAGGAGAAGCATGCGTGAACCATTTTTCTGACAACAGATTG 158382285 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || || ||||| | || ||||| || ||| || || || | || | ||| | | Sbjct 158382286 TAGGTTTCGATAGCAGCATCAATATCAGTTTTATGTATACCAACAGATACCCTCATCAGC 158382345 Query 63732 ATGTGCTGAGGTCTTTCA 63749 ||||| || || | |||| Sbjct 158382346 ATGTGTTGTGGCCGTTCA 158382363 >seq3 Length=181146889 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63274 || |||||||||||||||||||| ||||| | || ||| |||||||| |||| ||| || Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 172428868 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| ||||| || |||||||| || || ||||| | | | |||| |||||||||| Sbjct 172428867 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGG 172428808 Query 63335 TTCCAAGTATATGGCCATAACTCCAGGCC 63363 ||||| |||||||| | | ||||||| Sbjct 172428807 TTCCAGATATATGGCAAATGCACCAGGCC 172428779 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||||||| ||| |||||||||||||| || || || || |||| | || || |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| ||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTT 64128 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 || |||||||| |||| ||||||||||| || || || ||||| || || | | || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAA 172440340 Query 62456 ACTATTTCT 62464 ||| || || Sbjct 172440339 ACTGTTCCT 172440331 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 ||||| ||||||| |||||||| || || | || |||||||| || | || |||| Sbjct 172438160 ATCCTTCATATGTTTCGTATGGACCAAGCTCTTTGGCCAGTTCACAGCTAGATTCCAATG 172438101 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAA 62688 || | ||||||||||| || || || | ||||||| ||| || | | || |||| Sbjct 172438100 CAGCATAATAAATGGTCTCAAATATTTGTTTATTTAACATTTGAGCCTTCTCACTCTCAA 172438041 Query 62689 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 |||| || | | ||| || || || || || | || || || ||||| || ||||| | Sbjct 172438040 ATGGGTATCTCATGAGGATGAAAGCATCTGCCAGGCCCTGCACCCCAATCCCAATAGGCC 172437981 Query 62749 TATGTCTCTTATTAGA 62764 || |||| || || Sbjct 172437980 GGTGCTTCTTGTTGGA 172437965 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | || |||||||| || || |||||||||||||| | |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || |||||||||| || || || || ||| || || || | || | ||| | | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 63732 ATGTGCTGAGGTC 63744 ||||| || |||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 >seq12 Length=128359586 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || ||||||||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | ||| || || ||||| ||||| |||||||||||||||||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 33446 CAATAAGTCTCTCTCC 33461 | | | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 109 bits (120), Expect = 7e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||||||| || || ||||||||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | ||| || || ||||| || || |||||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 33446 CAATAAGTCTCTC 33458 | | | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq10 Length=136570856 Score = 105 bits (116), Expect = 8e-18 Identities = 116/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 32958 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTT----CTTGAGACATAACTCCCATTT 33013 ||| |||||| |||| | | |||| || |||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 | |||||||| || || || || ||||| ||||| |||||||||||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAA 33106 ||||||| ||||| ||||| || | ||| ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTAAAAA 119053552 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| || || | ||||| ||||| || ||||| || || ||||| | ||||||||||| Sbjct 119050097 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATG 119050038 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||||||||| ||||| || |||||||||| |||||| Sbjct 119050037 ATATTGGATGGGGAAGATCACAAATCTATGTGGATT 119050002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622105964314280