Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3 113 4e-20 seq2 105 6e-18 seq1 93.3 4e-14 seq4 87.8 2e-12 >seq3 Length=181146889 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || ||||| || | || ||| | || |||| |||| Sbjct 29378679 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAGTCAAGT 29378620 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||||||| ||||||||||| || ||||| || ||| Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| | || | | |||||| || || ||||||| | | | | | | ||||| || Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGTGACTACAAT 29378500 Query 26949 ATTCAAAAAGAATCTAC 26965 || || ||||| ||||| Sbjct 29378499 ATCCAGAAAGAGTCTAC 29378483 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | ||||| || | || ||| | || |||| ||| Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| ||||||| ||||||||||| || ||||| || ||| Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | |||||| || || ||||||| | | | | ||||| || Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAAT 29378728 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||| || || Sbjct 29378727 ATCCAGAAGGAATCCACCTTGCATCTTGTGCT 29378696 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | || ||| | || |||| ||| Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || || Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 29379016 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | |||||| || || ||||||| | | | || | || || || Sbjct 29379015 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAAT 29378956 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||||| || || Sbjct 29378955 ATCCAGAAGGAATCCACCCTTCATCTTGTGCT 29378924 >seq2 Length=179946965 Score = 105 bits (116), Expect = 6e-18 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 26738 AAATTATATAAGTACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGG 26797 ||| |||||| | ||||| | | | || ||||| | ||||| ||||| | ||||| Sbjct 133018966 AAAATATATATTT--TTTTTCTTTACAGAACATGCAGATATTTGTGAAAACTCTCACTGG 133019023 Query 26798 AAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGAT 26857 || | ||||| | ||| | || ||| || || || ||| | || || || || Sbjct 133019024 GAAGACCATCACACTAGAAGTTGAGCCAAGTGATACTATTGAGAATGTGAAGGCTAAAAT 133019083 Query 26858 TACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACT 26917 | || |||||||| || ||||| || |||||||| | |||| | |||||||| || Sbjct 133019084 TCAGGATAAAGAAGGCATTCCTCCAGACCAACAAAGGTTGATTTTTGCTGGCAAACAGCT 133019143 Query 26918 CGAAGATGATAGAAAC--GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975 ||||||| | ||| | ||||| |||||||||||||||| ||||| ||| | || || Sbjct 133019144 GGAAGATGGTCGAACCCTGTCAG--ACTATAACATTCAAAAGGAATCCACTCTGCACTTG 133019201 Query 26976 GTCCT 26980 || || Sbjct 133019202 GTTCT 133019206 Score = 102 bits (112), Expect = 8e-17 Identities = 168/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || |||||||| ||| | || ||| | ||| | || ||| Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || || ||| ||| || |||||||| || || || || || Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || ||| | |||| | ||||| ||||| ||||||| ||| | ||||| |||||| Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAG--ACTATA 133020084 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATAT 27003 |||| || |||||||| || | || | || || | || ||||| |||| |||||| Sbjct 133020085 ACATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGAATGCAAATAT 133020144 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| || ||||||||||| || | || ||| | || | ||| ||| Sbjct 133020134 AATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAG 133020193 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || | || ||| || || ||||||||||| || || || || || Sbjct 133020194 TGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 133020253 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-AC-GTCAGCGACTAT 26945 || ||| | |||| | || || ||||| ||||||| |||| || ||| ||||| Sbjct 133020254 GCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTC--TGACTAC 133020311 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| || ||||| ||| | || ||||||| | || ||||| || Sbjct 133020312 AATATTCAGAAGGAATCCACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 133020361 >seq1 Length=219802468 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 26752 CTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCA 26811 |||||| ||||| || ||||| | ||||| ||||| | ||||| || | ||||| Sbjct 160683606 CTTTTT--TCAAAGAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACAC 160683663 Query 26812 TCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAG 26871 | ||| | || ||| ||||| || ||| | || ||| || || || ||||||| Sbjct 160683664 TTGAAGTTGAGCCAAGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAG 160683723 Query 26872 GGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 | || || || || |||||||| | || | || |||||||| || || |||| ||| Sbjct 160683724 GCATTCCCCCTGACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAA 160683783 Query 26932 AC--GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | ||||| | || ||||||||||| ||||| ||| | || |||| || Sbjct 160683784 CCCTGTCAG--ATTACAACATTCAAAAGGAATCCACTCTGCACTTGGTTCT 160683832 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || |||||||| || | || ||| | ||| | ||| ||| Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||| || ||||||||||| || ||||| ||||| Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | |||| | || || || || ||||||| | | | ||||| ||| Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 26949 ATTCAAAAAGAATCTAC 26965 |||||||||||||| || Sbjct 160684485 ATTCAAAAAGAATCCAC 160684501 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || || |||||||| ||| | || || | ||| | ||| ||| Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| ||| || ||||||||||| || || || || || Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | |||| | || || ||||| ||||||| |||| | | ||||| || Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940 Query 26949 ATTCAAAAAGAATCTAC 26965 ||||| ||||| || || Sbjct 160684941 ATTCAGAAAGAGTCAAC 160684957 >seq4 Length=159726490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | ||||| ||||| | ||||| || | || ||| | || |||| | Sbjct 6847464 CACAATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGGTAGAGCC 6847523 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 || ||||| || ||| | |||||| |||||| ||||||||||| || ||||| || Sbjct 6847524 AAGTGACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGA 6847583 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || | || | | |||||| || || ||||||| | | | | ||||| Sbjct 6847584 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTA 6847643 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || |||||||| || | ||||| || || Sbjct 6847644 CAATATCCAGAAAGAATCAACCCTGCATCTTGTGCT 6847679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478016008311760