Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4 114 3e-20 seq3 114 3e-20 seq7 109 1e-18 seq8 107 5e-18 seq11 93.3 1e-13 seq10 93.3 1e-13 >seq4 Length=159726490 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 |||||| || |||||| |||||| || || || |||| |||||| || || ||||||||| Sbjct 158379831 GCACAGCAGGTATGGTATGCCATTATAGAGTCACAGACTGAGACTGGCACTCCCTATATG 158379772 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | || || ||| | |||||||||||| ||| |||||| |||| || || ||| | Sbjct 158379771 CTCTATAAGGATGCCTGCAACCGCAAGAGCAATCAGCAGAACCTGGGCACCATTAAATGC 158379712 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || |||||| | || |||||| Sbjct 158379711 AGTAACCTGTGCACAGAGATTGTGGAGTACACC 158379679 >seq3 Length=181146889 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 |||||| || ||||| |||||| || || ||||||| |||||| || || || || ||| Sbjct 172430220 GCACAGCAGGTATGGCATGCCATTATAGAGTCGCAGACTGAGACTGGCACTCCGTACATG 172430279 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 ||||||| ||| | |||||||||||| ||| |||||| |||| || || ||| | Sbjct 172430280 CTGTACAAGGATGCCTGCAACCGCAAGAGCAATCAGCAGAACCTGGGCACCATTAAATGC 172430339 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||||| || || |||||| | || |||||| Sbjct 172430340 AGTAACCTGTGCACAGAGATTGTGGAGTACACC 172430372 >seq7 Length=144084680 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 12829 CCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA 12888 ||||| ||||| | |||||||||||| ||||||| |||||| |||| |||| |||||| Sbjct 16619990 CCAAAGGTCAGGGCATCCATGTCTTCTGTTGCTGCAGCATACACTTTCCCTGCTTTTACT 16620049 Query 12889 TATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTAGG 12948 | |||||||| || || || || ||||| ||||| | || ||||||||||||||| Sbjct 16620050 AAGGCAGCACACGTGGCCTCAGCTTCACAGGGTGCATCCACATAAGGAATGCCCATTAGG 16620109 Query 12949 GTTAG 12953 || || Sbjct 16620110 GTAAG 16620114 >seq8 Length=121245977 Score = 107 bits (118), Expect = 5e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 12829 CCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGTTTTTACA 12888 ||||| ||||| | |||||||||||||||||||| |||||| ||||||||| |||||| Sbjct 6571398 CCAAAGGTCAGGGCATCCATGTCTTCAGTTGCTGCAGCATACACTTTTCCTGCTTTTACT 6571339 Query 12889 TATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAACGACCGGAATGCCCATTAGG 12948 | ||||| ||||| || || || ||||| ||||| | || ||||| ||||| ||| Sbjct 6571338 AAGGCAGCGCATGTGGCCTCAGCTTCACAGGGTGCATCCACATAAGGAATACCCATCAGG 6571279 Query 12949 GTTAGCA 12955 | |||| Sbjct 6571278 CTAAGCA 6571272 >seq11 Length=155008753 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 111384 GGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGA 111443 ||| |||| || |||| |||||| | |||||| ||||| |||||||||| |||||| Sbjct 107960803 GGATGTACCAACTCAAAAGAACTTTCTGCAAAAGGCGTAAAGATTTGGGATGCAAATGGC 107960744 Query 111444 TCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAAC-GAAGAAGGTGATCTCGGACC 111502 || || || ||| | || || | || || || | || ||||| ||||| ||||| Sbjct 107960743 TCCCGGGAATTTTTGGACA-AGCAAGGATTCTCAACCAGAGAGGAAGGAGATCTTGGACC 107960685 Query 111503 AGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAA 111545 || || || ||||| ||| | ||||||||||| || |||||| Sbjct 107960684 GGTGTATGGTTTTCAGTGGAGGCACTTTGGTGCTGAATACAAA 107960642 >seq10 Length=136570856 Score = 93.3 bits (102), Expect = 1e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 ||||| || |||||||||||| |||||||| |||||||| ||||| ||||| | Sbjct 119052033 GAACGAGTTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGCTCATTTGCATCC 119052092 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||||| | | ||||| || || || || || ||||| | ||| Sbjct 119052093 ATTTTTTGGCTGAAGAAACGGGGGCTGATGCCTGGACTCACTTTCTCTAATGAACTTATT 119052152 Query 22609 AGCCGAGATGA 22619 ||| ||||||| Sbjct 119052153 AGCAGAGATGA 119052163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301549533381806