Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 6e-24
seq3 113 4e-20
seq1 113 4e-20
seq4 98.7 9e-16
>seq2
Length=179946965
Score = 125 bits (138), Expect = 6e-24
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || |||||||| ||| | |||||| | ||||| ||| | |
Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || || ||| ||| || |||||||| || || || || ||
Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168
|||||| |||||| | ||||||||||| ||||||| | ||| | |||| || ||||
Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCA--GACTATA 133020084
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218
|||| || |||||||| || | || ||||| | | ||||||| |||
Sbjct 133020085 ACATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGGA 133020134
Score = 98.7 bits (108), Expect = 9e-16
Identities = 144/200 (72%), Gaps = 4/200 (2%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
||||||| | ||||| || ||||||||||| || | |||||| | || || || | |
Sbjct 133020134 AATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAG 133020193
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | || ||| || || |||||||||||||| || || || ||
Sbjct 133020194 TGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 133020253
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGCGATTAT 24167
|||||| | |||| | || |||||||| ||||||| ||||| || ||| || ||
Sbjct 133020254 GCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTC--TGACTAC 133020311
Query 24168 AACATTCAAAAAGAATCTAC 24187
|| ||||| || ||||| ||
Sbjct 133020312 AATATTCAGAAGGAATCCAC 133020331
Score = 93.3 bits (102), Expect = 4e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| ||||| | ||||| || | || || | ||||| ||| |
Sbjct 133018992 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 133019051
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
| || || || ||| | || || || ||| || ||||||||||| ||||| ||
Sbjct 133019052 AGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGAC 133019111
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATT 24165
||||| || |||||| | ||||| || || ||||||| ||| | |||| || |
Sbjct 133019112 CAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCA--GACT 133019169
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||||||||||| ||||| || | || || || | | |||||||| ||
Sbjct 133019170 ATAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019221
>seq3
Length=181146889
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||||||||| || ||||| || | |||||| | || || ||| | |
Sbjct 29378679 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGTAGAGTCAAGT 29378620
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||||||| |||||||||||||| ||||| || |||
Sbjct 29378619 GACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378560
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || |||| | | ||||||||| || ||||||| | | | | | || || ||
Sbjct 29378559 CAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTTTGTGACTACAAT 29378500
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || ||||| |||||
Sbjct 29378499 ATCCAGAAAGAGTCTAC 29378483
Score = 113 bits (124), Expect = 4e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | ||||| || | |||||| | || || ||| | |
Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || ||| | |||||| |||||| |||||||||||||| ||||| || ||
Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 29379016
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | ||||||||| || ||||||| | | | || | ||||| ||
Sbjct 29379015 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTGTGATTACAAT 29378956
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || ||||| || ||||| | |||
Sbjct 29378955 ATCCAGAAGGAATCCACCCTTCATCTTGTG 29378926
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||||||||| | ||||| || | |||||| | || || ||| | |
Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||||||| |||||||||||||| ||||| || |||
Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | ||||||||| || ||||||| | | | | | || || ||
Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTGTGACTACAAT 29378728
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || ||||| || | ||| | |||
Sbjct 29378727 ATCCAGAAGGAATCCACCTTGCATCTTGTG 29378698
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || |||||||| || ||||| || | |||||| | || || ||| | |
Sbjct 29377256 ATGCAGATCTTCGTAAAAACTTTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAGT 29377197
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || ||| ||||||| || ||||||||||| ||||| || |||
Sbjct 29377196 GACACCATAGAAAACGTGAAATCAAAGATTCAAGATAAAGAAGGCATTCCTCCAGACCAA 29377137
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| |||| | | |||||||| || |||||||
Sbjct 29377136 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATG 29377100
>seq1
Length=219802468
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || |||||||| ||| | ||||| | ||||| || | |
Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || ||| ||| || |||||||||||||| || || || ||
Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| |||||| | || |||||||| ||||||| ||||| | | || || ||
Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| ||||| || || | || ||||| | | ||||||| ||
Sbjct 160684941 ATTCAGAAAGAGTCAACCTTGCACTTAGTTCTTCGTCTGAGAGGTGG 160684987
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || |||||||| || | |||||| | ||||| || | |
Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || || | || ||| ||| || |||||||||||||| ||||| |||||
Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| |||||| | || ||||| || ||||||| | | | | || || |||
Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|||||||||||||| || | || |||||
Sbjct 160684485 ATTCAAAAAGAATCCACCTTGCACTTAGT 160684513
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| |||||| | || || || | ||||| | ||||| || | |
Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | || || ||| || |||||||||||||| || || ||||||
Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAA 160685108
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||| |||||| | || ||||| || ||||||| | | | | ||||| |||
Sbjct 160685109 CAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 160685168
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||||||||| || || | || |||||
Sbjct 160685169 ATTCAAAAAGAGTCCACCTTGCACTTAGT 160685197
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/237 (69%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042
|||| || ||||| | ||||| ||||| | ||||| || | || || | ||||| |
Sbjct 160683613 CAAAGAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTG 160683672
Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102
|| | | ||||| || ||| | || ||| || || || ||||||||||| || |
Sbjct 160683673 AGCCAAGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCC 160683732
Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAG 24160
| || ||||| || |||| | || ||||| || || || |||| ||| | ||||
Sbjct 160683733 CTGACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCA- 160683791
Query 24161 CGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| ||||||||||| ||||| || | || || || | | |||||||| ||
Sbjct 160683792 -GATTACAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847
Score = 93.3 bits (102), Expect = 4e-14
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | || || || | ||||| | ||||| ||| | |
Sbjct 160684077 ATGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGT 160684136
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || ||| | || || || || ||||| |||||||| || || ||||||
Sbjct 160684137 GACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 160684196
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168
|||||| |||| | | ||||| ||| | ||||||| |||| | |||| || ||||
Sbjct 160684197 CAGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCA--GACTATA 160684254
Query 24169 ACATTCAAAAAGAATCTAC 24187
| ||||| || ||||||||
Sbjct 160684255 ATATTCAGAAGGAATCTAC 160684273
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | || || || | ||||| | || || ||| | |
Sbjct 160683849 ATGCAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT 160683908
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| || ||| | || || ||| || ||||||||||| || || || || ||
Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168
|||||| |||||| | || ||||| || ||||||| ||||| | |||| || || |
Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCA--GACTACA 160684026
Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||||| ||||| || || | || |||||
Sbjct 160684027 ACATTCAGAAAGAGTCCACCTTGCACTTAGT 160684057
>seq4
Length=159726490
Score = 98.7 bits (108), Expect = 9e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
|| |||||| | ||||| ||||| | ||||| || | |||||| | || || ||| |
Sbjct 6847464 CACAATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGGTAGAGCC 6847523
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| ||||| || ||| | |||||| |||||| ||||||||||| || ||||| ||
Sbjct 6847524 AAGTGACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGA 6847583
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|| ||||| |||| | | ||||||||| || ||||||| | | | | || ||
Sbjct 6847584 CCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTA 6847643
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || |||||||| || | ||| | |||
Sbjct 6847644 CAATATCCAGAAAGAATCAACCCTGCATCTTGTG 6847677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429369923825115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |