Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 seq1 107 2e-18 >seq2 Length=179946965 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| |||||||| || | || || |||||||||||| | ||| ||| | || Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || ||||||| ||||||||||| | ||| ||| ||| Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| ||| ||||| ||| | ||||||| | |||| || | || |||||| Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 115466 ATTCAAAAAGAGTCTAC 115482 || || ||||| || || Sbjct 133020087 ATCCAGAAAGAATCCAC 133020103 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| ||||| ||||| || || ||||| || | ||| ||| | Sbjct 133018992 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 133019051 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || ||| ||| | || || |||||| |||||||||||| | || || Sbjct 133019052 AGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGAC 133019111 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||||| | |||| ||| |||||||| | ||||||| |||| || | || ||| Sbjct 133019112 CAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTAT 133019171 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||| | || |||| | | ||| |||| || Sbjct 133019172 AACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019221 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || | || || || || ||||| | || ||| | ||| Sbjct 133019223 ATGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTTGAGCCTAGC 133019282 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || || ||||| || || |||||| | ||| |||||| Sbjct 133019283 GATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 133019342 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | || | ||| ||||||||||| ||||||| || |||| || | ||||| || Sbjct 133019343 CAAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAAT 133019402 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||| || || || ||| | || |||| | | ||| |||| || Sbjct 133019403 ATTCAGAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019449 >seq1 Length=219802468 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || || || || ||||| | ||| ||| | || Sbjct 160684077 ATGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGT 160684136 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | ||||| ||||| || || |||||| | ||| |||||| Sbjct 160684137 GACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 160684196 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | || | ||| ||||||||||| ||||||| | |||| || | || ||||| Sbjct 160684197 CAGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAAT 160684256 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| || || |||||| | || |||| Sbjct 160684257 ATTCAGAAGGAATCTACTCTGCACTTGGT 160684285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| ||||| ||||| || || ||||| || | ||| ||| | Sbjct 160683618 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAGCCA 160683677 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || ||||| ||| | || ||| ||||| |||||||||||| | ||| ||| Sbjct 160683678 AGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCTGAC 160683737 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||||| | || | || |||||||| | || |||| |||| || | ||||| Sbjct 160683738 CAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTAC 160683797 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| || || ||| | || |||| | | ||| |||| || Sbjct 160683798 AACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || | || || || ||||||||| | ||| || | || Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | |||||| |||||| || ||||||||| | || ||||||| Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| ||| || || || | ||||||| | || | | || || ||| Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||||||||| || || Sbjct 160684485 ATTCAAAAAGAATCCAC 160684501 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| || || || || || ||||| | ||| || | || Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| || ||||||||| | ||| |||||| Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAA 160685108 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || ||| | |||| ||| || || || | ||||||| | || | | ||||| ||| Sbjct 160685109 CAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 160685168 Query 115466 ATTCAAAAAGAGTCTAC 115482 |||||||||||||| || Sbjct 160685169 ATTCAAAAAGAGTCCAC 160685185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424783969891960