Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 132 5e-26 seq4 122 8e-23 seq2 104 2e-17 seq1 100 3e-16 >seq3 Length=181146889 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| ||||| | ||| | ||| || ||||| || || |||||||| | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| || | ||||||||| ||||| Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| || ||| |||| | ||| | ||| || | | ||| | Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTAC 29379087 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||||| ||| || || || || ||||| || || |||||||||| Sbjct 29379088 CTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGA 29379137 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || || | ||| | ||| || ||||| || || ||||| || | Sbjct 29377030 CCACCCCTCAGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAA 29377089 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| || | ||| ||||| ||||| Sbjct 29377090 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 29377149 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | || || | | || | || || | | ||| | Sbjct 29377150 ATGCCTTCTTTATC-TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTAC 29377208 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || || | |||||||||||| ||||||||| Sbjct 29377209 CTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCATG 29377257 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| ||||| | ||| | ||| || ||||| || || ||||| || | Sbjct 29378680 GCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACA 29378739 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || ||||||||||| || |||| || | ||| ||||| ||||| Sbjct 29378740 AAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGG 29378799 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||||||||| ||| | | || || | | || | || || | | ||| | Sbjct 29378800 AATGCCTTCTTTGTC-TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTA 29378858 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || |||||||| || |||||||| Sbjct 29378859 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 98.7 bits (108), Expect = 9e-16 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||||| | ||||| || || ||||| ||||| ||||| || ||||||| Sbjct 172430370 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 172430311 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || || | |||||| || |||||||| ||||||||||| ||||||||| ||||| Sbjct 172430310 TGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTGCG 172430251 Query 145788 TCTC 145791 ||| Sbjct 172430250 ACTC 172430247 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| ||||| || || || ||||| || | | |||||| || || ||||||||||| Sbjct 29378482 GGTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCC 29378541 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTG-CT 131155 || |||| || | || ||||| ||||| || ||||||||||| ||| | | || | Sbjct 29378542 GGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTC-TTGAATCTTTGATT 29378600 Query 131156 TGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAG 131215 | | | || | || || | ||||| | || | ||||| ||| || || || | || Sbjct 29378601 TCACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAG 29378660 Query 131216 TTTTTACGAAAATCTGCATG 131235 ||||||| || ||||||||| Sbjct 29378661 TTTTTACAAAGATCTGCATG 29378680 >seq4 Length=159726490 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| ||||| | ||| | ||| || || || || || ||||| || Sbjct 6847695 GCCACCCCTCAGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGA 6847636 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||||| || || ||||||||||| || |||| || | ||||||||| ||||| Sbjct 6847635 AAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 6847576 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||||||||| ||| || ||| |||| | ||| | ||| || | | ||| | Sbjct 6847575 GATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTA 6847517 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || ||||| || || |||||||| Sbjct 6847516 CCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468 >seq2 Length=179946965 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||||||| || | || | ||| || || || || |||||||| || Sbjct 133020589 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAG 133020530 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || ||||||||||| || |||| || | ||| ||||| |||||| Sbjct 133020529 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGG 133020470 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| ||| | | ||| | || || ||| ||| | Sbjct 133020469 ATTCCTTCCTTATCCTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACT 133020410 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || |||| || || || || |||||||| Sbjct 133020409 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | |||||| || || || || | || || |||||||||||||| || || Sbjct 133019222 GCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGA 133019163 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || || || ||||| ||||| || | || || | || ||||| ||||| Sbjct 133019162 CAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 133019103 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||||| ||| | | ||| | |||||| | | ||| | Sbjct 133019102 AATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAAC 133019043 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || |||||||| || || ||||||||| Sbjct 133019042 TTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 133018994 >seq1 Length=219802468 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||| || || || || | || || |||||||||||||||||||| | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||| ||||| ||| |||| || | || ||||| || || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || |||||| || | | ||| | || || | | ||| | Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACT 160683668 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || |||||||| || || ||||||||| Sbjct 160683667 TCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 160683620 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || ||||| || | ||| ||||| || ||||||||||| || | Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || || |||||||| || || | || || | ||||||||| || || Sbjct 160684015 AGGGTTCTGCCA-TCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGG 160683957 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | ||| | ||| || | | ||| | Sbjct 160683956 AATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCAC 160683897 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || || || || || || |||||||| Sbjct 160683896 CTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || ||||| | || || || || ||||| ||||| || Sbjct 160684759 CCACCTCTGAGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAG 160684700 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||||||||| |||| || | || ||||| ||||| Sbjct 160684699 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGA 160684640 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || |||||| ||||| | ||| | ||| || | | ||| | Sbjct 160684639 ATTCCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACT 160684580 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || |||| || || || || |||||||| Sbjct 160684579 TCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || ||||| || | ||| ||||| ||||||||||||||||| Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||| || || | || || | ||| || || || || Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | ||| | || || | | || | Sbjct 160685095 ATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACT 160685036 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || ||||| || ||||| || || |||||||| Sbjct 160685035 TCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || ||||| || | ||| || || |||||||||||||| || Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||| || || | || || | |||||| || ||||| Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| || | | || | || || | | || | Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTT-TGCTTTTACATTTTCAATTGTGTCACTTGGTTCAAC 160684353 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| ||| || || |||| || || || || ||||||||| Sbjct 160684352 TTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/150 (74%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || ||| || ||||| || | ||| ||||| || ||||| ||||| || | Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| | || | || ||||| ||||| || || | || || | ||||||||| || || Sbjct 160684927 AGGGTTCTGCCA-TCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGG 160684869 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || ||||||||||| |||||| ||||| Sbjct 160684868 AATGCCTTCTTTGTCTTGGATTTT-TGCTT 160684840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471375388014720