Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4 122 1e-22 seq3 122 1e-22 seq12 111 2e-19 seq11 105 8e-18 seq10 105 8e-18 seq9 100 4e-16 >seq4 Length=159726490 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63129 || ||||||||||||||||| || ||||| | || ||| |||||||| |||| ||| || Sbjct 158380757 ACACGTTTCATAAAGAGATCCGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 158380815 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| ||||| ||||||||||| || || ||||| | | | |||| ||||||| || Sbjct 158380816 CTCCTCCTTTCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGG 158380875 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCC 63218 ||||| ||||||||| | | ||||||| Sbjct 158380876 TTCCAGGTATATGGCAAATGCACCAGGCC 158380904 Score = 116 bits (128), Expect = 5e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 ||||||||| ||| ||||| || ||||| | || || || ||||| | ||| || |||| Sbjct 158384213 CACTAAATATTTTCTTTGTCTCCTTGTGCAAGTTAGAAACAGCTATGCGAGCAGCCAGAA 158384272 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || ||||||| ||| || ||||||||| | || |||||||| || |||| Sbjct 158384273 TGGCATAGTCTGGATGTTTTGTTGTCAGGGTGGCTGCTGTCTCCGCTGCCAGGGTATCCA 158384332 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 158384333 GCTCTATAGTTGTGACTCCACTGTAAAGACCCTGAATTACTTTCATAGTAATTT 158384386 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || || || ||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 158378022 TACCTGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 158378081 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 ||| |||||||| |||| ||||||||||| || ||||| |||||||| |||| | || Sbjct 158378082 AGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCATAGGAGCCAGAAGCAA 158378141 Query 62311 ACTATTTCT 62319 ||| || || Sbjct 158378142 ACTGTTCCT 158378150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 ||||| |||| || || ||||| || || || || |||||||| || | || | || Sbjct 158378814 ATCCTTCATACGTTTCATATGGACCAAGCTCCTTGGCCAGTTCACAGCTAGATTCCAGTG 158378873 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 || | ||||||||||| || || || | ||||||||| ||| || | | || |||| Sbjct 158378874 CAGCATAATAAATGGTCTCAAATATTTGCTTATTTAGCATTTGAGCCTTCTCACTCTCAA 158378933 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 |||| || | | ||| ||||| || ||||| | || || || ||||| |||||||| | Sbjct 158378934 ATGGGTATCTCATGAGGATAAAAGCATCTGCCAGGCCCTGCACCCCAATCCCGATAGGCC 158378993 Query 62604 TATGTCTCTTATTAGA 62619 || |||| || || Sbjct 158378994 GGTGCTTCTTGTTGGA 158379009 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| || ||||| || || ||||| || | || || ||||| ||||| | Sbjct 158379692 ATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGATTGCTCTTGCGG 158379751 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || ||||||||||| || || | ||||| ||||| ||| |||| || |||||||| Sbjct 158379752 TTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGTGACTCTATAATG 158379811 Query 62921 GCTTTCCAGAC 62931 || | ||| || Sbjct 158379812 GCATACCATAC 158379822 >seq3 Length=181146889 Score = 122 bits (134), Expect = 1e-22 Identities = 118/149 (79%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATG 63129 || |||||||||||||||||||| ||||| | || ||| |||||||| |||| ||| || Sbjct 172428926 ACACGTTTCATAAAGAGATCAGGTATCCACATGGC-ATAGAATAGATCCCTGGCTCTCTG 172428868 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| ||||| || |||||||| || || ||||| | | | |||| |||||||||| Sbjct 172428867 CTCCTCCTTTCCAGTGTTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGG 172428808 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCC 63218 ||||| |||||||| | | ||||||| Sbjct 172428807 TTCCAGATATATGGCAAATGCACCAGGCC 172428779 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||||||| ||| |||||||| ||||| || || || || |||| | ||| || |||| Sbjct 172424806 CACTAAATGTTTTCTTTGTTTCCTTGTGCAGGTTGGAAACAGCTACGCGAGCAGCCAGAA 172424747 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 |||||||||| ||||||| || || |||||||| | || ||||| || ||||||| Sbjct 172424746 TGGCATAATCTGGATGTTTAGTTGTCAGGGTGGCTGCCGTCTCCGCTGCAAGTGTGTCCA 172424687 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983 |||| ||||| || ||| | || | || || || || ||||||| |||| Sbjct 172424686 GCTCTATAGTTGTGACCCCACTGTAAAGACCCTGTATTACTTTCATAGTAATTT 172424633 Score = 89.7 bits (98), Expect = 7e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || || |||||||| | ||||| || ||||| ||||| |||||||| || || | Sbjct 172440459 TACCTGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAAT 172440400 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || |||||||| |||| ||||||||||| || || || ||||| || || | | || Sbjct 172440399 GGATTCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAAGAAGCAA 172440340 Query 62311 ACTATTTCT 62319 ||| || || Sbjct 172440339 ACTGTTCCT 172440331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 ||||| ||||||| |||||||| || || | || |||||||| || | || |||| Sbjct 172438160 ATCCTTCATATGTTTCGTATGGACCAAGCTCTTTGGCCAGTTCACAGCTAGATTCCAATG 172438101 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAA 62543 || | ||||||||||| || || || | ||||||| ||| || | | || |||| Sbjct 172438100 CAGCATAATAAATGGTCTCAAATATTTGTTTATTTAACATTTGAGCCTTCTCACTCTCAA 172438041 Query 62544 ATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 |||| || | | ||| || || || ||||| | || || || ||||| || ||||| | Sbjct 172438040 ATGGGTATCTCATGAGGATGAAAGCATCTGCCAGGCCCTGCACCCCAATCCCAATAGGCC 172437981 Query 62604 TATGTCTCTTATTAGA 62619 || |||| || || Sbjct 172437980 GGTGCTTCTTGTTGGA 172437965 Score = 82.4 bits (90), Expect = 1e-10 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | || |||||||| || || |||||||||||||| | |||||| Sbjct 172427172 GTACCAGCATTGAACAGTGTGGGAGAAGCATGTGTGAACCATTTTTCAGACAACAGATTG 172427113 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || |||||||||| || || || || ||| || || || | || | ||| | | Sbjct 172427112 TAGGTTTCAATAGCTGCATCAATGTCAGTTTTATGGATGCCAACGGATACCCTCATCAGC 172427053 Query 63587 ATGTGCTGAGGTC 63599 ||||| || |||| Sbjct 172427052 ATGTGTTGTGGTC 172427040 >seq12 Length=128359586 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||| || ||||| ||||| |||||||||||||| ||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 32803 CAATAAGTCTCTCTCC 32818 | | | ||| ||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||||||||| || | ||||||||||| |||||||| ||||| || || | || | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||| || ||||| || || |||||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 32803 CAATAAGTCTCTC 32815 | | | |||||| Sbjct 132627418 CCACCACTCTCTC 132627430 >seq10 Length=136570856 Score = 105 bits (116), Expect = 8e-18 Identities = 116/153 (76%), Gaps = 5/153 (3%) Strand=Plus/Minus Query 32315 TTAAAAGTCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATTT 32370 ||| |||||| |||| || | |||| ||||||| |||| |||||||| ||||| | Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTG-GACATAACACCCATCT 119053645 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | |||||||| || || || || ||||| ||||| || ||||| ||||| || |||| Sbjct 119053644 TCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTTTT 119053585 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAA 32463 ||||||| || |||||||| || | ||| ||| Sbjct 119053584 CCATGAAGTCAAATGGATTTGTGGCCTTAAAAA 119053552 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||||||| || ||||| | ||| || |||||||| |||||||| || || || || Sbjct 119051263 ATCTTTAACATAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGAATATTCTCCATTGC 119051204 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAA 33034 ||||| || || || ||||| | |||||| |||| || |||||| | | ||| Sbjct 119051203 AATTTGGAAGCCATAAAAGCAGCGAGCCTCTGTAACTTGCACTTCTTTGCTAAA 119051150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230 ||||| ||||| || ||||| || || ||||| | |||||||||||||||||| || || Sbjct 119050084 GTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATGATATTGGATGGGG 119050025 Query 33231 AAAATAACAAATCTATTTGGATT 33253 || || |||||||||| |||||| Sbjct 119050024 AAGATCACAAATCTATGTGGATT 119050002 >seq9 Length=159361991 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 ||| |||| |||||| ||||||| |||||| |||||||| ||||||||||| || || || Sbjct 138038979 ATCCTTAATATATGTGTCAATCAGAAGACTGTACATTTCAGAATGAATGTTCTCCATTGC 138038920 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 |||||||| || || ||||| | | ||||||| | || ||||| Sbjct 138038919 AATTTGAAAACCATAAAAGCAGCGAACCTCGGTTACTTGCACTTC 138038875 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTT----CTTGAGACATAACTCCCATT 32369 ||||||||||| ||| ||||| || ||||| || |||| | ||| || ||||| Sbjct 138044454 TTTAAAAGTCAGCATTTAGAGTGAATTGATTTTCCGTGGCCTTG-GCCATGACACCCATC 138044396 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || ||||||||||| || || || || ||||| || || |||||||| || || ||| Sbjct 138044395 TTCTGGTATTCACCAACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAGGAGATGTTT 138044336 Query 32430 TCCATGAAATCGAATGGATT 32449 |||||||| || |||||||| Sbjct 138044335 TCCATGAAGTCAAATGGATT 138044316 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 32370 ||||||||||| | || || | ||| || |||| | | ||||| || ||||| | Sbjct 138029415 TTTAAAAGTCAGCGTCCAGTGTGAAAGTGTTATCTTTTGGCTTTGACATGACACCCATCT 138029356 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | ||||||||||| || | || || || || ||||| || ||||| || || || |||| Sbjct 138029355 TCTGGTATTCACCAACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAAAGAGATGTTTT 138029296 Query 32431 CCATGAAATCGAATGGATT 32449 ||||||| || |||||||| Sbjct 138029295 CCATGAAGTCAAATGGATT 138029277 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| | ||||| ||||| || ||||| || || ||||| | ||||||||||||| Sbjct 138025044 ACCTCTTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATGTCATGA 138024985 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 || || || || || || |||||||||| |||||| Sbjct 138024984 TACTGGATGGGGAAGATCACAAATCTATGTGGATT 138024950 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || || ||||| | ||| || |||||||| ||||||||||| || || || Sbjct 138026818 ATCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCAGAATGAATGTTCTCCATTGC 138026759 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAA 33015 ||||| || || || ||||| | |||||| |||| Sbjct 138026758 GATTTGGAAGCCATAAAAGCAGCGAGCCTCAGTAA 138026724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632776335426800