Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq2 104 2e-17 seq3 93.3 4e-14 seq4 91.5 1e-13 >seq1 Length=219802468 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||| || || || ||||| | ||| || || || Sbjct 160684077 ATGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGT 160684136 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | ||||| ||||| ||||| |||||| ||||| |||||| Sbjct 160684137 GACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 160684196 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | || | ||| |||||||||||||||||| | ||| || | || |||||| Sbjct 160684197 CAGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAAT 160684256 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || |||||||| || || || || | ||||| | ||||||| Sbjct 160684257 ATTCAGAAGGAATCTACTCTGCACTTGGTCCTTCGTCTCAGAGGTGGCA 160684305 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || ||||| ||||| | ||| ||||| || Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | |||||| |||||| |||||||||||| ||||| || || Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| || || ||| | |||||| | ||| || | || || ||| Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || ||||| || || | || ||||| | |||||| | ||||| Sbjct 160684941 ATTCAGAAAGAGTCAACCTTGCACTTAGTTCTTCGTCTGAGAGGTGG 160684987 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || |||||||| || | || || || ||||||||| | ||| ||||| || Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | |||||| |||||| |||||||||||| |||| ||||| Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| || || || |||||||| ||| | | || || || Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||||||||| || | || ||||| | ||||| | ||||| Sbjct 160684485 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 160684531 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| ||||||| || || ||||| | ||| ||||| || Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| |||||||||||| ||||| |||||| Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAA 160685108 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| || || || |||||||| ||| | | ||||| || Sbjct 160685109 CAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 160685168 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || |||||||| || || | || ||||| | ||||| | ||||| Sbjct 160685169 ATTCAAAAAGAGTCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 160685215 >seq2 Length=179946965 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| || || || ||||| | || || || ||| Sbjct 133019223 ATGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTTGAGCCTAGC 133019282 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || || ||||| ||||| |||||| ||||| |||||| Sbjct 133019283 GATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 133019342 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||||| | || | ||| |||||||||||||||||| | ||| || | ||||| ||| Sbjct 133019343 CAAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAAT 133019402 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||| || || || || || | ||| || | ||||| Sbjct 133019403 ATTCAGAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019449 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| |||||||| || | || || |||||||||||| | ||| || || || Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || ||||||| || |||||||| ||||| || || Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || | |||| ||| ||||| ||| |||||||| ||| || | || ||||| Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| || | || ||||| | |||||| | ||||| Sbjct 133020087 ATCCAGAAAGAATCCACCTTGCACTTAGTTCTCCGTCTGAGAGGTGG 133020133 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| |||||||| || | || || || || |||||| | || ||||| || Sbjct 133020134 AATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAG 133020193 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || | ||| | |||||| ||||| |||||||||||| ||||| || || Sbjct 133020194 TGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 133020253 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || || | |||| ||| || || ||| |||||||| | ||| || | || || || Sbjct 133020254 GCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAA 133020313 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||| || || ||||| || || || || || | ||||| | ||||| Sbjct 133020314 TATTCAGAAGGAATCCACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 133020361 >seq3 Length=181146889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| ||||| ||||||||| |||| || || || Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || || ||| | || ||| ||| || |||||||||||| |||| || || Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 29379016 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || ||| | || | ||| ||||| || |||||||| | | || || ||||| | Sbjct 29379015 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTCTG--TGATTACA 29378958 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||| || || ||||| || || ||| | ||| | |||||| | ||||| Sbjct 29378957 ATATCCAGAAGGAATCCACCCTTCATCTTGTGCTTCGTCTGAGGGGTGG 29378909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| ||||| ||||||||| |||| || || || Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| ||| ||| |||||||||||| |||| || ||| Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 || ||| | || | ||| ||||| || |||||||| | | || || || || | Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACGCTTTG--TGACTACA 29378730 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||| || || ||||| || | ||| | ||| | |||||| | ||||||| Sbjct 29378729 ATATCCAGAAGGAATCCACCTTGCATCTTGTGCTTCGTCTGAGGGGTGGCA 29378679 >seq4 Length=159726490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 |||||| || ||||||||||| |||| ||||| ||||||||| | || || || || Sbjct 6847467 AATGCAGATCTTTGTCAAAACCCTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAG 6847526 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || ||| | || ||| ||| || ||||||||||| | || || || Sbjct 6847527 TGACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCA 6847586 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || ||| | || | ||| ||||| || |||||||| || | | || || || Sbjct 6847587 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACCCTTTCAGACTACAA 6847646 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||| || |||||||| || || ||| | ||| | |||||| | ||||||| Sbjct 6847647 TATCCAGAAAGAATCAACCCTGCATCTTGTGCTTCGTCTGAGGGGTGGCA 6847696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422483003458600