Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq1 113 4e-20 seq2 87.8 2e-12 seq12 86.0 5e-12 seq4 86.0 5e-12 >seq3 Length=181146889 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || || ||||| || | | || ||| |||||| || || || || Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | |||||||| |||||||||||||||||||| ||||||| ||| Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | || || || |||| ||| | || ||||| |||| |||| Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 29378663 TTTACAAAGATCTGCATG 29378680 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| || | | || || |||||| || || || || Sbjct 29378711 GTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCG 29378770 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 29378771 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378830 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 29378831 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTT 29378890 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 29378891 TTTACAAAGATCTGCAT 29378907 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || ||||| || | | || || |||||| || || || ||| Sbjct 29377060 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 29377119 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| ||||||||||||||||| || ||||||| ||| Sbjct 29377120 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTC 29377179 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| | | || || || | ||| | || ||||| |||| |||| Sbjct 29377180 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTT 29377239 Query 114366 TTTACAAAAATCTGCATG 114383 ||||| || ||||||||| Sbjct 29377240 TTTACGAAGATCTGCATG 29377257 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || || |||||||| | | || || |||||| || || || || Sbjct 29378939 GTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCG 29378998 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| |||||||||||||||||||| |||||| ||| Sbjct 29378999 GCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTTGCTTTG 29379058 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| ||| | || ||||| ||||| ||| Sbjct 29379059 ACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTT 29379118 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 29379119 TTCACAAAGATCTGCATG 29379136 >seq1 Length=219802468 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | || || |||||||||||||||||||| | ||| || |||||| Sbjct 160685198 AACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 160685139 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || ||||| | || | | |||||| || || ||||||||||||||||| Sbjct 160685138 CAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTG 160685079 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||||| ||| | | |||| |||||| | | ||| || || | || | || | Sbjct 160685078 GAT-TTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCT 160685020 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||||||| ||||| ||||| |||||||| Sbjct 160685019 TCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | || |||||||||||||||||||| || | ||| || |||||| Sbjct 160684514 AACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 160684455 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || |||||||| | || | | ||| || || |||||||||||||||||||| Sbjct 160684454 CAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTG 160684395 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| ||||| | ||||| ||||| | | ||| || || | ||| | || || Sbjct 160684394 GATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTT 160684335 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || || ||||| ||||||||| Sbjct 160684334 CCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| ||||||||||||||||| || || || ||| || Sbjct 160683830 AACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTC 160683771 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| |||||| |||| | | |||||||| || |||||||||||||| || Sbjct 160683770 CAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTG 160683711 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || || ||| | | |||| ||||| | | || || || | || | || || Sbjct 160683710 GATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTT 160683651 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||||||| ||||| ||||||||| Sbjct 160683650 CCCAGTGAGAGTTTTCACAAATATCTGCATG 160683620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | || || ||||| ||||| ||||| || || || | |||||| Sbjct 160684970 AACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGACAGGGTTCTGCCATCTTC 160684911 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||||| |||||||| | || | | ||| ||||| || ||||||||||||||||| Sbjct 160684910 TAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTG 160684851 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| ||||| | ||||| ||||| | | ||| || || | || | ||||| Sbjct 160684850 GATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACTTCAAGAGTAATTGTTTT 160684791 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || || ||||| || ||||| Sbjct 160684790 ACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 |||||| || | || || ||||| ||||||||||| || || || | |||||| Sbjct 160684058 AACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTC 160683999 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || |||||||| | || | | ||| ||||| || ||||| ||||||||||| Sbjct 160683998 CAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTG 160683939 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 || ||| |||| | |||| ||||| | | || || || | || | || || Sbjct 160683938 GATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTCTT 160683879 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || ||||| |||||||| Sbjct 160683878 CCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 >seq2 Length=179946965 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| ||||||||||| || || || || ||| |||||| Sbjct 133019204 AACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTC 133019145 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || ||||| ||||| | || | | |||||||| ||||||||||||||||| || Sbjct 133019144 CAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCCTG 133019085 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || || | | |||| || || | | || || || | || | || || Sbjct 133019084 AATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTT 133019025 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||||||| ||||| ||||||||| Sbjct 133019024 CCCAGTGAGAGTTTTCACAAATATCTGCATG 133018994 >seq12 Length=128359586 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| |||| || ||| |||| || | || || ||||| || ||||| || || Sbjct 101402861 ATACCTCCACACAGAAGCAACACTAGGTGCAATGTGGACTCTTTCTGGATGTTATAGTCA 101402802 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | ||||||||| ||||||||||| ||| |||| ||| ||||| || Sbjct 101402801 TATAGAGTGTGTTCATCTTCAAGCTGTTTACCAGCAAAGAGCAGACACTGCTGGTCAGGG 101402742 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || || || || | | ||||| ||| || |||||| Sbjct 101402741 GGAATACCTTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTATCACTGGATTTA 101402682 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | ||||| | || || ||||||||||| || ||||| Sbjct 101402681 CCCTCAAGGGTGATTGTTTTCCAAGTAAGGGTTTTTACAAAGATTTGCAT 101402632 >seq4 Length=159726490 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || || ||||| || | || || |||||| || || || || Sbjct 6847664 GTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCG 6847605 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| || ||||||||||| |||||| ||| Sbjct 6847604 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTG 6847545 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || || | ||| | || ||||| ||||| ||| Sbjct 6847544 ACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAGGGTT 6847485 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 6847484 TTGACAAAGATCTGCAT 6847468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419581229123196