Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4 114 2e-20 seq3 114 2e-20 seq11 95.1 2e-14 >seq4 Length=159726490 Score = 114 bits (126), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| |||||||| ||||| ||||||||||| || ||||||||||||| ||| | Sbjct 158379678 TGGTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCT 158379737 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGG 244821 ||||| |||| ||||||||| ||||| |||||||| |||| Sbjct 158379738 GATTGCTCTTGCGGTTGCAGGCATCCTTATAGAGCATATAGGG 158379780 >seq3 Length=181146889 Score = 114 bits (126), Expect = 2e-20 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 ||||||||| |||||||| ||||| ||||||||||| || ||||||||||||| ||| | Sbjct 172430373 TGGTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCT 172430314 Query 244779 GATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||| |||| ||||||||| |||||||| |||||| Sbjct 172430313 GATTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATG 172430276 >seq11 Length=155008753 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||||| |||| || ||| |||| || || || || || ||||| ||| |||| || | Sbjct 132627430 GAGAGAGTGGTGGCATTTTCCGCAGTAGAAGGAATATTTTTCTCTGGCTCCTTTGCTGCA 132627371 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTCG-ATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 || |||||||| ||| | |||| ||| ||||| ||||||||||| || ||||| || || Sbjct 132627370 ATTTTCTGGCTGAAGAA-AAGGGGTCTCATGCCTGGACTCACCTTTTCCAACGAGCTGAT 132627312 Query 42818 CAGCAGGGACGAGG 42831 ||| || ||||||| Sbjct 132627311 CAGTAGAGACGAGG 132627298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943063952540080