Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 seq5 91.5 1e-13 seq3 84.2 2e-11 seq63962 82.4 6e-11 seq8 82.4 6e-11 >seq15 Length=120101378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 34873012 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 34872953 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 34872952 CCATAACTGATTTAATGAGCCATTCG 34872927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 34873012 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 34872953 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 34872952 CCATAACTGATTTAATGAGCCATTCG 34872927 >seq5 Length=144167370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 4434550 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4434609 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 4434610 CCATAACTGATTTAATGAGCCATTCG 4434635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 74/86 (86%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 4434550 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4434609 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 4434610 CCATAACTGATTTAATGAGCCATTCG 4434635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/85 (86%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 4482758 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4482817 Query 114390 CCAAAACTGATATATTGAGCCATTC 114414 ||| ||||||| || |||||||||| Sbjct 4482818 CCATAACTGATTTAATGAGCCATTC 4482842 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/85 (86%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 4482758 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4482817 Query 115587 CCAAAACTGATATATTGAGCCATTC 115611 ||| ||||||| || |||||||||| Sbjct 4482818 CCATAACTGATTTAATGAGCCATTC 4482842 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 4465028 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCAATCAAAGGAA 4465087 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || |||||| |||| Sbjct 4465088 CCATAACTGATTTAATGAGCCGTTCG 4465113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || || ||| |||||| Sbjct 4465028 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCAATCAAAGGAA 4465087 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || |||||| |||| Sbjct 4465088 CCATAACTGATTTAATGAGCCGTTCG 4465113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||| ||| || || ||| |||||| Sbjct 4471303 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGAAACAGATGGAGCGATCAAAGGAA 4471362 Query 114390 CCAAAACTGATATATTGAGCCATTCG 114415 ||| ||||||| || ||||||||||| Sbjct 4471363 CCATAACTGATTTAATGAGCCATTCG 4471388 Score = 87.8 bits (96), Expect = 1e-12 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAG--ATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||| ||| || || ||| |||||| Sbjct 4471303 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGAAACAGATGGAGCGATCAAAGGAA 4471362 Query 115587 CCAAAACTGATATATTGAGCCATTCG 115612 ||| ||||||| || ||||||||||| Sbjct 4471363 CCATAACTGATTTAATGAGCCATTCG 4471388 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 4506397 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4506456 Query 114390 CCAAAACTGATATATTGAGCCATT 114413 ||| ||||||| || ||||||||| Sbjct 4506457 CCATAACTGATTTAATGAGCCATT 4506480 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| |||||||||||||| || | |||| |||||| Sbjct 4506397 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAGGAA 4506456 Query 115587 CCAAAACTGATATATTGAGCCATT 115610 ||| ||||||| || ||||||||| Sbjct 4506457 CCATAACTGATTTAATGAGCCATT 4506480 >seq3 Length=181146889 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| || ||||| |||||||| ||| |||||||| || |||||||| | Sbjct 29378908 ACCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCA-C 29378966 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | || ||| | || |||| |||||||||||||| |||| | |||||| || | Sbjct 29378967 AGAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 29379026 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTA---TCAGTAGATT 34075 | | || |||||||| || ||| |||| || | || || || ||| | | | Sbjct 29379027 GAATGCCTTCTTTGTCTTGGATCTTT-GCTT--TGACATTCTCAATAGTGTCACTTGGCT 29379083 Query 34076 CGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || || || || || |||||||||||||| ||||| Sbjct 29379084 CTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 >seq63962 Length=314 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| |||| |||||| || || ||| ||| ||||| |||||||| |||| Sbjct 195 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 254 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || | || |||| || ||||||||||||||||| |||||||| || Sbjct 255 AGAGTGCGGC-CATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTC 307 >seq8 Length=121245977 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 115528 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAG 115583 || || ||||| ||| |||||||||||| |||||||||||||| || | |||| ||| Sbjct 23649022 TGGCAAGTATTAGCTTTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAG 23648963 Query 115584 GAACCAAAACTGATATATTGAGCCATTC 115611 |||||| ||||||| || |||||||||| Sbjct 23648962 GAACCATAACTGATTTAATGAGCCATTC 23648935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Minus Query 114331 TGTCATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAG 114386 || || ||||| ||| |||||||||||| |||||||||||||| || | |||| ||| Sbjct 23649022 TGGCAAGTATTAGCTTTAGAATTACCACAGTTATCCAAGTAACAGATGGAGCGATCAAAG 23648963 Query 114387 GAACCAAAACTGATATATTGAGCCATTC 114414 |||||| ||||||| || |||||||||| Sbjct 23648962 GAACCATAACTGATTTAATGAGCCATTC 23648935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396539606922466