Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4 150 2e-31 seq3 149 6e-31 seq1 132 5e-26 seq2 127 2e-24 >seq4 Length=159726490 Score = 150 bits (166), Expect = 2e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || |||||||| || || ||||| |||| | ||||||| | || Sbjct 6847680 AAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATC 6847621 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| ||||| || |||||||| || Sbjct 6847620 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTC 6847561 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | || |||| | || || |||| || | || Sbjct 6847560 TTGGA-TCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGG 6847502 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||| |||| ||||| || || || |||||| Sbjct 6847501 TCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATT 6847467 >seq3 Length=181146889 Score = 149 bits (164), Expect = 6e-31 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||||| || ||||| || || || |||||||| || ||||||| | || Sbjct 29378923 AAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATC 29378982 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||||||||| |||||||| |||||||| || Sbjct 29378983 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTC 29379042 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| ||| | || |||| | || || || | || | || Sbjct 29379043 TTGGA-TCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGG 29379101 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||| |||| ||||| || || || ||||| Sbjct 29379102 TCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || ||||| || || || ||||| || | ||||||| | || Sbjct 29377044 AAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATC 29377103 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | || | || ||| ||||| |||||||| |||||||| || Sbjct 29377104 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATC 29377163 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| || || || | || |||| | || || |||| || | ||| Sbjct 29377164 TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGT 29377223 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| ||||||||||||||||| || ||||| Sbjct 29377224 CTTGCCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || || ||||| || | |||||| | ||||| |||||||||||| Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || ||||| |||||||| |||||||| ||||| || ||| || Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || |||| | || || || | || | ||||||||| ||||||||| Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662 Query 64427 TTTACGAAAATTTGCAT 64443 ||||| || || ||||| Sbjct 29378663 TTTACAAAGATCTGCAT 29378679 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| ||||| | || ||||| || || || ||||| || | ||||| | || Sbjct 29378695 AAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATC 29378754 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | || | || ||| ||||| |||||||| |||||||| || Sbjct 29378755 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTC 29378814 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| || || || | || |||| | || || || | || | ||| Sbjct 29378815 TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGT 29378874 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| |||||||| || || ||||| Sbjct 29378875 CTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||| | |||||| |||| ||||| ||||||||| ||||||||||||||| | ||||| Sbjct 172430370 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 172430311 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTC 154735 | ||| |||||| || || ||||||| |||||||| ||||| || || Sbjct 172430310 TGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTC 172430259 >seq1 Length=219802468 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || || |||||||||||||||||||| | | ||||| | || Sbjct 160685201 AAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATC 160685142 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || ||| |||| | | ||| || || || ||||| |||||||| || Sbjct 160685141 TTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTC 160685082 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| ||| ||| ||| | || |||| | || ||||||| ||| | || Sbjct 160685081 TTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGT 160685022 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||||| ||||| || || || ||||| Sbjct 160685021 CTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || |||||||||||||||||||| || | | ||||| | || Sbjct 160684517 AAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 160684458 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || ||| |||| | | |||||| || |||||||| |||||||| || Sbjct 160684457 TTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTC 160684398 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| |||||| || | ||| |||| | || ||||| | || | ||| Sbjct 160684397 TTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGT 160684338 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || || || || || || ||||| Sbjct 160684337 CTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| ||||||||||| || | || ||||| | ||||| ||||||||||| Sbjct 160685413 GTGGATTCTTTCTGAATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 160685354 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | ||||||||| || ||||| ||||| || || || |||||| |||| Sbjct 160685353 GCAAATATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTT 160685294 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | || ||||| | ||| | |||||| || || || || Sbjct 160685293 ACATTCTCAATGGTGTCACTTGGTTCAACTTCAAGAGTAATGGTCTTCCCAGTTAAGGTC 160685234 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 160685233 TTGACAAATATCTGCAT 160685217 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || || ||||| ||||||||||| |||| | ||| | | || Sbjct 160684061 AAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATC 160684002 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || ||| |||| | | ||||||||| || ||||| |||||||| || Sbjct 160684001 TTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTC 160683942 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| |||||| ||||||| ||| | || |||| | ||||| || | ||| | || Sbjct 160683941 TTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGT 160683882 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || |||| || || || || || ||||| Sbjct 160683881 CTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||||||||||||||||| | ||| || | || || ||||| ||||| Sbjct 160683817 GTGGATTCCTTTTGAATGTTGTAATCTGACAGGGTTCGTCCATCCTCCAGCTGTTTGCCA 160683758 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || || ||||| || ||||| |||||||| ||||| | |||| ||||| Sbjct 160683757 GCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGGA-TTTTAGCTTT 160683699 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| ||| | ||| |||| | || ||||| | || | |||||| || || | ||| Sbjct 160683698 CACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTCCCAGTGAGAGT 160683639 Query 64426 TTTTACGAAAATTTGCATTTT 64446 ||| || || || ||||| || Sbjct 160683638 TTTCACAAATATCTGCATGTT 160683618 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || |||||||| ||||| ||||| || | || ||||| | || Sbjct 160684745 AAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGGCCATC 160684686 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | || | | || ||||| |||||||||||||| || || Sbjct 160684685 TTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCCTTATC 160684626 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| ||| ||| | || |||| | || ||||| | ||| | ||| Sbjct 160684625 CTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATGGT 160684566 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || || || || || || || ||||| Sbjct 160684565 CTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 >seq2 Length=179946965 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||||||||| || |||| | ||| || | ||||| ||||| ||||| Sbjct 133019191 GTGGATTCCTTTTGAATGTTATAGTCTGACAGGGTTCGACCATCTTCCAGCTGTTTGCCA 133019132 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || || ||||| |||||||| |||||||| || || ||||| ||| Sbjct 133019131 GCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCCTGAATTTTAGCCTTC 133019072 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||||| | || ||||||| || | |||||| || || | |||| Sbjct 133019071 ACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTT 133019012 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 133019011 TTCACAAATATCTGCATGTT 133018992 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | || ||||| | ||||| ||||||||||| Sbjct 133020559 GTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCA 133020500 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | | ||| ||||| ||||| |||||||| || || || |||||| |||| Sbjct 133020499 GCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGGATTTTTGCCTTT 133020440 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||| |||| || || ||||| | || | |||||| || || || || Sbjct 133020439 ACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTC 133020380 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 133020379 TTCACAAATATCTGCAT 133020363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498970073416520