Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq1 98.7 1e-15 seq4 91.5 1e-13 seq2 84.2 2e-11 >seq3 Length=181146889 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || || |||||||| | | || || || || || || || |||| | Sbjct 29378486 GACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCA 29378545 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | |||||||| ||||| || ||||||||||| ||| | |||| ||| | Sbjct 29378546 AAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTC-TTGAATCTTTGATTTCAC 29378604 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | |||||| | ||||| ||||| | || | || || ||||||| |||||| Sbjct 29378605 ATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTT 29378664 Query 138600 TACAAAAATCTGCATG 138615 |||||| ||||||||| Sbjct 29378665 TACAAAGATCTGCATG 29378680 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || | ||| | | | || ||||| || || |||||||| | Sbjct 29378680 GCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACA 29378739 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || |||| | |||| | | ||||||||| ||||| Sbjct 29378740 AAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGG 29378799 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||||||||| ||| | |||| ||| | | ||| | |||||| | | ||| | Sbjct 29378800 AATGCCTTCTTTGTC-TTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTA 29378858 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || |||||||| ||||||||||| |||||||| Sbjct 29378859 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | ||| ||||| |||||||| ||| ||||| || ||||||| Sbjct 172430370 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 172430311 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| ||||| ||||| || || ||| | ||||||||||| ||| ||||| Sbjct 172430310 TGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTC 172430259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | || | ||| | | | || ||||| || || ||||| || | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| ||| | | || | ||||| | | ||| ||| Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACC 29379088 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| ||||| ||||| ||||||||| Sbjct 29379089 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 29379136 >seq1 Length=219802468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | |||||| || | | | ||||| || |||||||||||||| | Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || || || ||||| | | | || | | ||| ||||| || || Sbjct 160684015 AGGGTTCTGCCA-TCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGG 160683957 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||||||| |||| | || | ||||| | | |||||| Sbjct 160683956 AATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCAC 160683897 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||| || || ||||| |||||||| Sbjct 160683896 CTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | |||||| || | | ||||||| || ||||| |||||||| | Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || | || | || || ||||| ||||| | | | || | | ||| ||||| || || Sbjct 160684927 AGGGTTCTGCCA-TCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGG 160684869 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||||||| ||||| | ||| | ||||| | | || || Sbjct 160684868 AATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAAC 160684809 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 160684808 TTCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||| | ||| || || | | || ||||||||||||||||| || | Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || ||||| || | |||| | | |||||||| || || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || |||||| ||| | | || | ||||| | | ||| || Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACT 160683668 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| |||||||| ||||| ||||||||| Sbjct 160683667 TCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 160683620 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| | |||||| || | | | || || ||||||||||||||||| Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || || ||||| | | | || | | ||| || || ||||| Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||||||| ||||| | ||| | ||||| | | || || Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACT 160684352 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| | || || ||||| ||||||||| Sbjct 160684351 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 >seq4 Length=159726490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | || | ||| | | |||| || || || || |||||||| Sbjct 6847695 GCCACCCCTCAGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGA 6847636 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 6847635 AAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGG 6847576 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||||||||| ||| ||| ||| | | || | ||||| | | ||| || Sbjct 6847575 GATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTAC 6847516 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| ||||| ||||| |||||||| Sbjct 6847515 CTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| ||| ||||| | ||| ||||| |||||||| ||| ||||| || ||||||| Sbjct 158379681 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 158379740 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 |||| ||||| ||||| || || || ||||||| || || ||| ||||| Sbjct 158379741 TGCTCTTGCGGTTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTC 158379792 >seq2 Length=179946965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| |||||| | ||| || || | | || |||||||||||||| ||||| Sbjct 133019222 GCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGA 133019163 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || || ||||| || | | | || | | |||||||| ||||| Sbjct 133019162 CAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGG 133019103 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || |||||||| || ||| |||| | || | | || | || || | | ||| | Sbjct 133019102 AATGCCTTCTTTATC-CTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAA 133019044 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || | || || ||||| |||||||| ||||| ||||||||| Sbjct 133019043 CTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 133018994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495592241051760