Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2 122 6e-23 seq1 111 1e-19 seq3 104 2e-17 >seq2 Length=179946965 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| ||||| ||||| || ||||| ||||| ||||| || Sbjct 133019905 CCACCTCTCAGACGGAGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGAT 133019846 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||||| | ||||| | || || ||||| | ||||| | |||||||| ||| Sbjct 133019845 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019786 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || ||| | || |||||||| || ||||| Sbjct 133019785 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCACTTGGCTCTACC 133019726 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 133019725 TCAAGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | ||| || || || || || || || || || |||||||| Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||| |||||||||||||| | ||||| | ||||| || ||| Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || ||| | || |||||||||||| || || Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACC 133019270 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||| || || ||||||| || || ||||| || ||||| Sbjct 133019269 TCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || || ||||| ||||| || || ||||| | ||||| Sbjct 133019659 ACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCC 133019600 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | ||||| | |||||||| ||||| ||||||||||| Sbjct 133019599 AGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGG 133019540 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || |||||||| || ||||| || | ||||| || || Sbjct 133019539 ATTTTGGCTTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTTC 133019480 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| ||||| || ||||| Sbjct 133019479 CCTGTCAGTGTTTTCACAAATATCTGCAT 133019451 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| ||| | | ||| || || || || || || ||||| ||||| || || Sbjct 133019223 TGCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTG 133019164 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || ||| | ||||| | ||||||||||| | ||||| | |||||||| | Sbjct 133019163 ACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAG 133019104 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||| || || |||||| || ||| | || |||||||| || || | Sbjct 133019103 GAATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCAA 133019044 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | |||| || ||||| || || || |||||||| ||||| || ||||| || Sbjct 133019043 CTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 133018992 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | |||||| || | ||| || ||||| || ||||| || || Sbjct 133020133 CCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTGAC 133020074 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | ||| |||||||| | ||||| | ||| ||||| ||| Sbjct 133020073 AGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 133020014 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| || ||| |||| || || || || || || Sbjct 133020013 ATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACT 133019954 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||||||||| || | || || ||||| |||||||| Sbjct 133019953 TCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| ||||||||||| || |||| | | | ||||| | || Sbjct 133020565 TGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCATCTTCCAGCTGC 133020506 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 |||||||| | ||||| | ||||||||| || ||||||||||| || ||||| Sbjct 133020505 TTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGGATTTTT 133020446 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||||| | || || || || || || || || | ||||||||| || || || Sbjct 133020445 GCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTCCCAGTT 133020386 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 133020385 AAGGTCTTCACAAATATCTGCAT 133020363 >seq1 Length=219802468 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || ||||| || || || || || || || || |||| | ||||| Sbjct 160684285 ACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCTTCC 160684226 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||||||||| ||||||| | |||||| || ||||| ||||||||||| Sbjct 160684225 AATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 160684166 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| |||||| | || ||||| || || || || || | ||||| || || Sbjct 160684165 ATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGTCTTC 160684106 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| || || ||||| |||||||| Sbjct 160684105 CCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| || | ||| || |||||||| ||||||||||| ||| | | | ||||| Sbjct 160685198 AACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTC 160685139 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | ||||| | |||||| || ||||| ||||| ||||| Sbjct 160685138 CAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTG 160685079 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || || || || ||| || |||| ||||| || || Sbjct 160685078 GATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTT 160685019 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| ||||| || ||||| Sbjct 160685018 CCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | ||| || || || || || || ||||| ||||||||||| Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | |||||||||||| | ||||| | |||||||| ||| Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||||| ||| ||| | || || || || || || || Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACT 160683668 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || |||||||| ||||| || ||||| || Sbjct 160683667 TCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTT 160683618 >seq3 Length=181146889 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036 |||||||| ||||| || || ||||| || | || | | | ||||| | || ||| Sbjct 29378480 AGGGTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTG 29378539 Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || || | ||||| | |||||||| ||||| ||||| ||||| ||| || | Sbjct 29378540 CCGGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGAT 29378599 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| ||||||| || || || ||||| || | ||||||||| || || |||| | Sbjct 29378600 TTCACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAA 29378659 Query 15157 GTTTTTACAAAAATTTGCAT 15176 ||||||||||| || ||||| Sbjct 29378660 GTTTTTACAAAGATCTGCAT 29378679 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| | ||| || || || || || ||||| || | || | | | ||||| | || Sbjct 29378704 ATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTG 29378763 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | ||||| | ||||||||| ||||| ||||| ||||| ||| || Sbjct 29378764 CTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTT 29378823 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| || ||||||| || || || ||||| || | ||||||||| || || || Sbjct 29378824 TGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGT 29378883 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||||||||| || |||||| Sbjct 29378884 CAGGGTTTTTACAAAGATCTGCATA 29378908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356921439041405