Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq1 104 2e-17 seq2 82.4 7e-11 >seq3 Length=181146889 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || |||||||| || | | |||||| ||| || ||||| || || Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || ||||||| | || || || ||||| ||||| || |||| | ||| | | || || Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGT-CTTGAATCTTTGATTT 29378601 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | |||||| | ||| || || | ||| | || ||||| |||| ||| Sbjct 29378602 CACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGT 29378661 Query 127096 TTTTACAAAAATCTGCATG 127114 ||||||||| ||||||||| Sbjct 29378662 TTTTACAAAGATCTGCATG 29378680 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || || || || || ||||||||||| | | ||||| ||| || Sbjct 29378926 CACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTC 29378985 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || ||||||| | |||||| || ||||| ||||| || ||||| Sbjct 29378986 CAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTG 29379045 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | || | ||||| | ||| || || | ||| | || | Sbjct 29379046 GATCTT-TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCT 29379104 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||||| ||||| ||||| ||||||||| Sbjct 29379105 TGCCAGTCAGGGTTTTCACAAAGATCTGCATG 29379136 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||| | ||| | || || || || || |||||||| || | | |||||| ||| || Sbjct 29378698 CACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTC 29378757 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || ||||||| | ||| || || ||||| ||||| || ||||| | Sbjct 29378758 CAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCT-T 29378816 Query 127024 GATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 || | | || || | | ||| | |||||| | ||| || || | ||| | || | Sbjct 29378817 GAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCT 29378876 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| ||||||||||| |||||||| Sbjct 29378877 TGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 >seq1 Length=219802468 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||||||||| |||||||| | ||||| ||| || ||||| || ||| Sbjct 160685185 GTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCA 160685126 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||||| ||| ||||| || || ||||| || ||||| |||||| ||| Sbjct 160685125 GCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTA 160685066 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | || ||||| | || | || || |||||||| ||| Sbjct 160685065 ACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTT 160685006 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 160685005 TTCACAAATATCTGCAT 160684989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || ||||||||||| ||||| || | ||||| ||| || ||||| || ||| Sbjct 160684501 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCA 160684442 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 || | ||||||| ||||||||| ||||| ||||| || ||||| |||||| ||| || Sbjct 160684441 GCAAAAATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATTTT-TGCTTT 160684383 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | ||||| | || ||||| | ||| | || || || || | || Sbjct 160684382 TACATTTTCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGT 160684323 Query 127096 TTTTACAAAAATCTGCATG 127114 || ||||| ||||||||| Sbjct 160684322 CTTGACAAATATCTGCATG 160684304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || || ||||| ||||||||||| || | ||||| ||| || Sbjct 160684741 ACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGGCCATCTTCC 160684682 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || ||||||||| || || || ||||| || || ||||| ||| | Sbjct 160684681 AGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGG 160684622 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | || | ||||| | ||| ||||| | || | || || Sbjct 160684621 ATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATGGTCTTC 160684562 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || || ||||| |||||||| Sbjct 160684561 CCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 >seq2 Length=179946965 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | ||||| || | || || || || |||||||||||||| | Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || | ||||| ||||| ||||||||| || ||||| || || Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| |||||||| |||||| ||||| | || | || || || ||| || Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACC 133019270 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | || || || |||| || || ||||| ||||||||| Sbjct 133019269 TCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCATG 133019222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474858677775920