Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq1 109 5e-19 seq2 107 2e-18 >seq3 Length=181146889 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||||| || |||||||| |||||||| || || | | ||| ||| ||| Sbjct 29377048 ACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCC 29377107 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | || ||||| || ||||||||||||||||||||| Sbjct 29377108 AGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGA 29377167 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | ||||| |||||| | ||| || || || |||| || ||| Sbjct 29377168 ATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTG 29377227 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||||||| || || ||||| Sbjct 29377228 CCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 45141 AGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTT 45200 || || || || || |||||||| || || | | ||| | ||| |||| || || Sbjct 29378480 AGGGTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTG 29378539 Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || || | ||||| | ||| ||||| || |||||||||||||| |||||||| ||| | Sbjct 29378540 CCGGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGAT 29378599 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||||| |||||| ||||| || || || |||| || ||||| || | | Sbjct 29378600 TTCACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAA 29378659 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||||||||| || ||||| Sbjct 29378660 GTTTTTACAAAGATCTGCAT 29378679 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||||| || |||||||| |||||||| || || | | || ||| || Sbjct 29378698 CACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTC 29378757 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | ||||| | || ||||| || |||||||||||||| ||||| Sbjct 29378758 CAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 29378817 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| ||| ||| | ||||| |||||| | ||| || || || |||| || || Sbjct 29378818 AATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTT 29378877 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || ||||||||||| || ||||| Sbjct 29378878 GCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || |||||||| |||||||| ||||| | || ||| ||| || Sbjct 29378926 CACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTC 29378985 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | ||||| | |||||||| || |||||||||||||| ||||| Sbjct 29378986 CAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTG 29379045 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| ||||| || | ||||| | ||| || || || |||| || || Sbjct 29379046 GATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTT 29379105 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || ||||| ||||| || ||||| Sbjct 29379106 GCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 >seq1 Length=219802468 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGAC--GGTTTTAGAATCGTCCAATT 45195 ||||| || |||||||| || |||||||| || |||| |||| | ||| ||||||| Sbjct 160684279 TGCAGAGTAGATTCCTTCTGAATATTATAGTC--TGACAGGGTTCTTCCATCTTCCAATT 160684222 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || ||||||||| || || || || ||||||||||| || ||||| |||| Sbjct 160684221 GTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGGATTT 160684162 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | || | ||||| | ||| ||||| ||||||| || || || | Sbjct 160684161 TGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGTCTTCCCTG 160684102 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| ||||||||| Sbjct 160684101 TCAGGGTCTTCACAAATATTTGCATC 160684076 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 ||||| || ||||||||||| || || ||||| |||| | || | ||| |||| | Sbjct 160683823 TGCAGAGTGGATTCCTTTTGAATGTTGTAATC--TGACAGGGTTCGTCCATCCTCCAGCT 160683766 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || ||| | ||||| | ||| ||||| || |||||||||||||||||||| |||| Sbjct 160683765 GTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGAATGCCTTCTTTATCTTGGATTT 160683706 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | ||| | || | ||||| | ||| ||||| || || | || || || | Sbjct 160683705 TAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAACTTCAAGTGTGATGGTCTTCCCAG 160683646 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| ||||| || ||||| Sbjct 160683645 TGAGAGTTTTCACAAATATCTGCAT 160683621 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| |||| ||||| || || || ||||| || || | |||| | ||| || Sbjct 160684969 ACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGACAGGGTTCTGCCATCTTCT 160684910 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || || | ||||||| |||||||| || |||||||||||||| ||||| Sbjct 160684909 AGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGG 160684850 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 |||||| ||| | ||| | ||||| | || ||||| ||||||| ||||| Sbjct 160684849 ATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACTTCAAGAGTAATTGTTTTA 160684790 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || |||| || || ||||| ||||||||| Sbjct 160684789 CCAGTTAAGGTCTTGACAAATATTTGCATC 160684760 >seq2 Length=179946965 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| |||| || ||||| || ||||| ||||| || |||| | || | ||| | Sbjct 133020115 ACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTC--TGACAGGGTTCGGCCATCTT 133020058 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| ||| || || || | ||||||| |||||||| || ||||| ||||||||||| | Sbjct 133020057 CCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCT 133019998 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||||||| || | ||| | ||||| | ||| ||||| || |||| |||| Sbjct 133019997 GAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACTTCAAGGGTAATGGTTT 133019938 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || |||| || || ||||| ||||||||| Sbjct 133019937 TACCAGTTAAGGTCTTGACAAATATTTGCATC 133019906 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| || ||||| ||||| | |||| | ||| ||||||||| Sbjct 133019425 TGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCCAATTGT 133019366 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||| || || || ||||||||||| || ||||| ||||| Sbjct 133019365 TTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGGATTTTG 133019306 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | || ||| || ||| || || ||||||| || || || || Sbjct 133019305 GCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTCCCTGTC 133019246 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| || ||||| Sbjct 133019245 AAGGTCTTCACAAATATCTGCAT 133019223 Score = 98.7 bits (108), Expect = 9e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 ||||| || ||||||||||| || ||||| || |||| | || || ||| |||| | Sbjct 133019197 TGCAGAGTGGATTCCTTTTGAATGTTATAGTC--TGACAGGGTTCGACCATCTTCCAGCT 133019140 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | ||||| | ||| ||||| || ||||||||||||||||| ||||||| Sbjct 133019139 GTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTATCCTGAATTT 133019080 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 | || | || | || || | ||| ||||| || || | || || || | Sbjct 133019079 TAGCCTTCACATTCTCAATAGTATCACTTGGCTCAACTTCTAGTGTGATGGTCTTCCCAG 133019020 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| ||||| || ||||| Sbjct 133019019 TGAGAGTTTTCACAAATATCTGCAT 133018995 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| || ||||| || || | ||| | ||| |||| || Sbjct 133019653 TGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCCAGCTGC 133019594 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||||| ||| ||||| || ||||||||||| || ||||| ||||| Sbjct 133019593 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTG 133019534 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| || | || || | ||| || || ||||||| || || || || Sbjct 133019533 GCTTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTTCCCTGTC 133019474 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || |||||| Sbjct 133019473 AGTGTTTTCACAAATATCTGCATC 133019450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 ||||| || |||||||| || ||||| || || | ||| | ||| |||| ||| Sbjct 133020337 TGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCCAGTTGC 133020278 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || |||| |||||||| || |||||||||||||| ||||| ||||| Sbjct 133020277 TTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTG 133020218 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | ||||| | || || || || |||| || || || ||| Sbjct 133020217 GCTTTTACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTCTTCCCAGTT 133020158 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| |||||||| Sbjct 133020157 AATGTCTTGACAAATATTTGCAT 133020135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| |||||||| || || ||||| || || | ||| | ||| |||| || Sbjct 133019882 ATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCCAGCTG 133019823 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || || | ||||||| ||| ||||| || ||||||||||| || ||||| ||||| Sbjct 133019822 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTT 133019763 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || || | ||| || || ||||||| || || || || Sbjct 133019762 GGCCTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTTCCCTGT 133019703 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || |||||| Sbjct 133019702 CAGTGTTTTCACAAATATCTGCATC 133019678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451392809228680