Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq7 100 4e-16 seq8 91.5 2e-13 >seq7 Length=144084680 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 10122 CTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAA 10181 ||||||||||| || ||| || | ||||| || | |||| ||||||| || | || Sbjct 111933511 CTTACCCCATGGCCTAATGCTTTGGTGAAGGCGGCTCCTTTTGCCATATCCGTTTTGAAG 111933452 Query 10182 AATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCG 10241 || |||||||| ||||||||| | || ||||| ||||||| |||||||| || || || Sbjct 111933451 AACTGGTGTGTGAAGTGTTGCGCAAAGAAAGCAAACATCACATTGGTGCCTTGAGGGTCA 111933392 Query 10242 GGGATAAAGGTCCTCCGAATAAAAACTTTGTCCAC 10276 || ||||| | || || || | | ||| ||||| Sbjct 111933391 GGAATAAATTTTCTTCGCATCAGGAATTTTTCCAC 111933357 Score = 93.3 bits (102), Expect = 6e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 || ||||| ||| ||||| |||||||||||||||||||| | || || || ||| | Sbjct 111936472 TCAAAACCCACGCTTCCGCCAAAGGTGCTGGGTTTCCAGTATTCAGGAGAACATATGGGG 111936413 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||| | || || ||||| |||| ||| | ||| |||| || || Sbjct 111936412 TTTCCCATCAGGCCTTTTAGAGAGAATGGAGCTCCCATCTCTACCATGGTCTCTCCAAAA 111936353 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || || ||||| || || | ||| || | | || | || ||||| | || || | Sbjct 111936352 ATAGCTCCGGGGCGAGGCTGTTCCACAAGTAGTCCCGGATAAAGTTCCATGGCATCAATA 111936293 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || || || || || || || || | || |||||||| |||| || Sbjct 111936292 TCACCGTATAGTTTCTCAAATTCAGCTGACATTTCCTTCTCTCCTAAAA 111936244 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 ||||||||||| | || ||| |||||| |||| | ||| ||| |||| || Sbjct 111935132 GAATTGTTGTAGAGAAACTGTGGGTAACCGTACTCCTTTTCGTTGATGGCAAAAGTGTCG 111935073 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 || | || | ||||||| |||| ||||||||||| || || || |||| || || ||| Sbjct 111935072 GGTAGAAGGGGATGCCAGTGGTACAGGGTATTGAATTCTGCAGCAATTCTATTTTGATAC 111935013 Query 9616 TGAAA-----GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 ||||| || | || |||||| | |||||||| | || | |||||| || | Sbjct 111935012 TGAAATTTCTGGTTGAAC--AACAGT---TGTGGGTCAAATTTGAGTTTGAAGTGATATC 111934958 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 | ||||| ||||| ||||| | || | ||| || |||||||| || Sbjct 111934957 CACTGAGGTGCTGTACATAATCCTCTATGACAATCTTGATGGTTTCACC 111934909 >seq8 Length=121245977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10119 GCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTA 10178 || ||||||||||| || ||| || | ||||| || | ||| ||||||| || | Sbjct 92242918 GCCCTTACCCCATGGCCTAATGCTTTGGTGAAGGCAGCCCCTTTTGCCATATCCGTTTTG 92242859 Query 10179 AAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGA 10238 || || |||||||| |||||||| | || ||||| ||||| | ||||||||| || || Sbjct 92242858 AAGAACTGGTGTGTGAAGTGTTGAGCAAAGAAAGCAAACATAACGTTGGTGCCTTGAGGG 92242799 Query 10239 TCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCAC 10276 || || ||||| | || || || | | ||| ||||| Sbjct 92242798 TCAGGAATAAATTTTCTTCGCATCAGGAATTTCTCCAC 92242761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722750668662200