Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq3 82.4 9e-11 >seq4 Length=159726490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| | ||| || || |||| || | ||||||||||||| ||||| ||| Sbjct 158379680 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGA 158379739 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||| || |||||||| ||||||||||| || || || ||||| || || Sbjct 158379740 TTGCTCTTGCGGTTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTCAGTCTGT 158379799 Query 116593 GACTTGAGAATAGCCTTCCATAC 116615 |||| | ||| || | |||||| Sbjct 158379800 GACTCTATAATGGCATACCATAC 158379822 >seq3 Length=181146889 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 |||||||| | ||| || || |||| || | ||||||||||||| ||||| ||| Sbjct 172430371 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGA 172430312 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| ||| || ||||||||||| ||||| || || || || ||||| || || Sbjct 172430311 TTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTGC 172430252 Query 116593 GACTTGAGAATAGCCTTCCATAC 116615 |||| | ||| || | |||||| Sbjct 172430251 GACTCTATAATGGCATGCCATAC 172430229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612678712208280