Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 127 2e-24 seq3 122 1e-22 seq1 98.7 1e-15 seq63962 95.1 1e-14 seq12 91.5 2e-13 seq2 86.0 7e-12 >seq4 Length=159726490 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||| ||||||| || || || |||||||||||||| | Sbjct 6847696 TGCCACCCCTCAGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTG 6847637 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || |||||||||||||| || ||||| | ||||||||| | | Sbjct 6847636 AAAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAG 6847577 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| |||||| |||| || | | ||||| || | || | Sbjct 6847576 GGATACCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTA 6847517 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | || ||||| ||||| ||||| ||||| |||||||| |||||| || Sbjct 6847516 CCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCATTGTG 6847464 >seq3 Length=181146889 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||| ||||| | || ||||| ||||||||||| || | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || |||||||||||||| || ||||| | ||||||||| | || Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| |||||| |||| || | | ||||| || | || || Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACC 29379088 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 29379089 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | ||| |||||||| || ||||| |||||||||||||| Sbjct 29378679 TGCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCAC 29378738 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || |||||||||||||| || ||||| | ||| ||||| | | Sbjct 29378739 AAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAG 29378798 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || ||||| ||||| || | | | | ||||| || | || | Sbjct 29378799 GAATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTA 29378858 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || ||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 29378859 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| | || ||||| | || || |||||||||||||| || Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || ||||| | || | || || ||||| ||||| || | | Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || |||| || ||||| ||||| |||| ||||| || Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 29378668 AAAGATCTGCAT 29378679 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | || |||||||| || ||||| |||||||||||||| | Sbjct 29377030 CCACCCCTCAGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAA 29377089 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| || || ||||| | ||| ||||| | || Sbjct 29377090 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 29377149 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || ||||| || | | | | ||||| || | || || Sbjct 29377150 ATGCCTTCTTTATCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACC 29377209 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| ||||| |||| ||||| || ||||| ||||| Sbjct 29377210 TCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 >seq1 Length=219802468 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || ||||||| ||||| || | || || || || || |||||||| || Sbjct 160685443 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAG 160685384 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || |||||||| | ||||||||| | || Sbjct 160685383 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGA 160685324 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| ||| || ||| | || | | ||||| || | ||| || Sbjct 160685323 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTCTCAATGGTGTCACTTGGTTCAACT 160685264 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || || || | || || ||||| || ||||| Sbjct 160685263 TCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| ||||| || || || || ||||||||||| || Sbjct 160684759 CCACCTCTGAGACGAAGGACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAG 160684700 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || ||||| | || ||||| | || Sbjct 160684699 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGA 160684640 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || ||||| || | | ||||| || | || || Sbjct 160684639 ATTCCTTCCTTATCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTTGGCTCAACT 160684580 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || ||||| || || || | || || ||||| || ||||| Sbjct 160684579 TCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 >seq63962 Length=314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||||||||| |||| || ||| || ||||| |||||||| | Sbjct 193 TGCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 252 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | |||||||| | || || ||||| |||||||| ||||||| ||||||||||| Sbjct 253 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTC 307 >seq12 Length=128359586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | | ||||||| || |||||||| ||| || ||||| || ||||| || Sbjct 101402858 CCTCCACACAGAAGCAACACTAGGTGCAATGTGGACTCTTTCTGGATGTTATAGTCATAT 101402799 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||| | || || || ||||| || || || || | || | ||||||||| | || Sbjct 101402798 AGAGTGTGTTCATCTTCAAGCTGTTTACCAGCAAAGAGCAGACACTGCTGGTCAGGGGGA 101402739 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||| || ||| | | | | || || || |||| | Sbjct 101402738 ATACCTTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTATCACTGGATTTACCC 101402679 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 || | ||||| ||||| | || || ||||| |||||||||||||| || || Sbjct 101402678 TCAAGGGTGATTGTTTTCCAAGTAAGGGTTTTTACAAAGATTTGCATCTTCCA 101402626 >seq2 Length=179946965 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| |||| ||| ||||| || ||||||||||| ||| Sbjct 133019677 CCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGTATATTGTAGTCAGAT 133019618 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | | || || |||||||| || || || ||||| | || ||||| | || Sbjct 133019617 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019558 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||| || |||| || | | || || || | || || Sbjct 133019557 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATAGTATCACTTGGCTCTACC 133019498 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 133019497 TCAAGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019451 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||| ||||| || || || || ||||||||||| ||| Sbjct 133019905 CCACCTCTCAGACGGAGAACCAAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGAT 133019846 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | | || || |||||||| || || || ||||| | || ||||| | || Sbjct 133019845 AGTGTTCTCCCATCTTCCAGCTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGA 133019786 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| ||| || ||||| || | | || || || | || || Sbjct 133019785 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCACTTGGCTCTACC 133019726 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 133019725 TCAAGAGTAATTGTCTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 133019679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564475094999160