Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 8e-15 seq2 82.4 5e-11 >seq1 Length=219802468 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| | ||| || || || ||||| ||| |||||||| || || |||| Sbjct 160685219 CATC-CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAAT 160685161 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | | | ||| |||| |||| || ||||| ||||||| || | ||| ||||| | Sbjct 160685160 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAG 160685101 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | |||||||||||| |||||| |||| || | | ||||| || Sbjct 160685100 GGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTT 160685041 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || | ||||||||| || || || | ||||| || || |||||||| Sbjct 160685040 CAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| | ||| || || || ||||| ||| ||||||||| || || || | Sbjct 160684535 CATC-CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGT 160684477 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | | | | ||| |||| |||| || || || ||||||| || | ||||||||| | Sbjct 160684476 CAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAG 160684417 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | |||||||||||| |||||| ||| | | | | |||||| || Sbjct 160684416 GAGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTT 160684357 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || | ||||| || || || ||||| || || || || ||||||||| Sbjct 160684356 CAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCATG 160684304 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| || ||| || || || ||||| || ||||| || ||||| || | Sbjct 160684991 CATC-CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGT 160684933 Query 39548 CGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 | | || | |||| ||| || | ||| || || ||||||| || | |||||| Sbjct 160684932 CAGACA----GGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGG 160684877 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | ||| | |||||||||||| |||||| ||| | | | | |||||| Sbjct 160684876 TCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTT 160684817 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | ||||||||||||||| ||||| || || || || || ||||| Sbjct 160684816 GGTTCAACTTCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761 >seq2 Length=179946965 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/236 (68%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| | ||| || ||||| |||| |||| ||| || || ||||| || | Sbjct 133020365 CATC-CCACCTCTGAGACGAAGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGT 133020307 Query 39548 CGGCCAAAACGCGTTC----ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 | | || | |||| ||| |||| ||| || || |||||||||| | |||||| Sbjct 133020306 CAGACA----GTGTTCTGCCATCTTCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGG 133020251 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | ||| | |||||||||||| ||||| ||| | | | | |||||| Sbjct 133020250 TCAGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTTACATTTTCAATTGTGTCACTT 133020191 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || | |||||||| || || ||||| || || || || || ||||| Sbjct 133020190 GGTTCAACCTCAAGGGTAATTGTCTTCCCAGTTAATGTCTTGACAAATATTTGCAT 133020135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346912235056289