Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 141 9e-29 seq2 127 2e-24 seq3 125 7e-24 >seq1 Length=219802468 Score = 141 bits (156), Expect = 9e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || ||||| ||||| || ||||| ||||| || || |||||||| | || || ||| Sbjct 160683615 AAGAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAG 160683674 Query 38298 GCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 | | |||| | | | | |||| ||||||| || ||||| || |||||| | Sbjct 160683675 CCAAGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCT 160683734 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 |||||||| || | || | ||| |||||||||||||| || | || ||||| || Sbjct 160683735 GACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGAT 160683794 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||||||| | || ||||| ||||| || ||||||||||| || Sbjct 160683795 TACAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || | || || || ||||| ||| | || || || | | Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | |||| |||||||| |||||||| || ||||| | || || Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | |||| || || || |||||||| || | ||||| || ||||||||| Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||| ||| | || |||| || || || ||| | ||||| || Sbjct 160684485 ATTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 160684531 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || | || || || ||||| || | || || || | | Sbjct 160685217 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAACCAAGT 160685276 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | |||||||| || || || || |||||| | ||||| Sbjct 160685277 GACACCATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 160685336 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 160685337 CAGAGATTGATATTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 160685396 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || || |||| ||||||||||| || || Sbjct 160685397 ATTCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTTTGAGGGGTGG 160685443 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || | || || || ||||| || | || || ||| | | Sbjct 160684533 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAGCCAAGT 160684592 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||||| || || || |||||||| | |||||| Sbjct 160684593 GACACTATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAAGGAATTCCTCCTGACCAA 160684652 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | || ||||| |||||||| || | ||||| ||| |||||||| Sbjct 160684653 CAAAGATTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAT 160684712 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || ||||||||||| || ||| | ||||| || Sbjct 160684713 ATTCAGAAAGAATCCACTCTGCATTTGGTCCTTCGTCTCAGAGGTGG 160684759 >seq2 Length=179946965 Score = 127 bits (140), Expect = 2e-24 Identities = 173/240 (72%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 38233 TCTTTaaaaaa-aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGAC 38291 |||||| | || ||||| ||||| || ||||| ||||| || || |||||||| | || Sbjct 133018983 TCTTTACAGAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAA 133019042 Query 38292 GTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATT 38351 || ||| | | || | | | | | || | ||||| | || ||||| || ||| Sbjct 133019043 GTTGAGCCAAGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATT 133019102 Query 38352 CCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 38411 || | |||||||| || | |||| || |||||||||||||| || | || ||||| Sbjct 133019103 CCTCCAGACCAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTG 133019162 Query 38412 AACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| ||||||||| | || ||||| ||||| || ||||||||||| ||| Sbjct 133019163 TCAGACTATAACATTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGGC 133019222 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || | || || || ||||| ||| | || || ||| ||| Sbjct 133020363 ATGCAGATATTTGTGAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAGCCCAGT 133020422 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | |||||||| || || || ||||| || | |||||| Sbjct 133020423 GACACAATTGAGAATGTAAAGGCAAAAATCCAGGATAAGGAAGGAATCCCTCCTGACCAA 133020482 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || ||||| |||||||| || | ||||| ||| ||||||||| Sbjct 133020483 CAGAGATTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCTGACTACAAC 133020542 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || || |||| ||||||||||| || || Sbjct 133020543 ATACAGAAAGAATCCACCCTCCACCTGGTCCTGCGTTTGAGGGGTGG 133020589 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || || || || || | || || ||| | | Sbjct 133019679 ATGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGT 133019738 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||||| ||||| || || |||||| | |||||| Sbjct 133019739 GATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAA 133019798 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | || || || |||||||| || | | | || || |||||||| Sbjct 133019799 CAAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAAT 133019858 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || ||||||||||| || ||| ||||||| || Sbjct 133019859 ATACAGAAAGAATCAACCCTGCATTTGGTTCTCCGTCTGAGAGGTGG 133019905 >seq3 Length=181146889 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| | || ||||| ||||| ||| | || || ||| | | Sbjct 29377256 ATGCAGATCTTCGTAAAAACTTTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAGT 29377197 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | ||| ||| || | || ||||| || ||||| | ||||| Sbjct 29377196 GACACCATAGAAAACG-TGAAATCAAAGATTCAAGATAAAGAAGGCATTCCTCCAGACCA 29377138 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 29377137 ACAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTTTGTGACTACAA 29377078 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || ||||| | || || ||| |||| || || Sbjct 29377077 TATCCAGAAGGAATCCACCTTGCATCTTGTACTTCGTCTGAGGGGTGG 29377030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499497360398720