Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 2e-13 seq10 87.8 2e-12 seq9 84.2 3e-11 >seq3 Length=181146889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | ||| ||||| |||| ||| | ||||| || |||| |||| || Sbjct 172430371 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGA 172430312 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| |||||| ||||||||||| |||||||| || || || ||||| ||||| Sbjct 172430311 TTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTGC 172430252 Query 106625 GACTTGAGAATTGCCTTCCACAC 106647 |||| | ||| || | ||| || Sbjct 172430251 GACTCTATAATGGCATGCCATAC 172430229 >seq10 Length=136570856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 ||||||| | |||||||||||| ||||| || || ||||| || ||||| |||||| Sbjct 119052163 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 119052104 Query 117355 AACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | |||| |||| | ||| ||||| || |||||||| ||||| || ||| ||||| || Sbjct 119052103 AGCCAAAAAATGGATGCA-AATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATGC 119052045 Query 117414 AAAAA 117418 || || Sbjct 119052044 AACAA 119052040 >seq9 Length=159361991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 117295 TCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCTTC 117354 ||||||| | |||||||||||| ||||| || || ||||| || || || |||||| Sbjct 138027422 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCTTC 138027363 Query 117355 AACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 117413 | |||| |||| | ||| ||||| |||||||||||||| || || ||| ||||| || Sbjct 138027362 AGCCAAAAAATGGATGCA-AATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATGC 138027304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589184082552920