Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 118 7e-22 seq1 104 2e-17 seq4 102 5e-17 seq3 102 5e-17 >seq2 Length=179946965 Score = 118 bits (130), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | ||| ||| || |||||||||||||| || Sbjct 133019221 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGAC 133019162 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| |||| |||| ||||||||||| || ||||| || | | ||| |||||| | || Sbjct 133019161 AGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGA 133019102 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || || || ||| || || || || || || | |||| | ||||| Sbjct 133019101 ATGCCTTCTTTATCCTGAATTTTAGCCTTCAC--ATTCTCAATAGTATCACTTGGCTCAA 133019044 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || | || ||||| || || |||||||| |||||||| |||||||| ||| Sbjct 133019043 CTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTTC 133018991 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| || |||| | | ||| ||||| | ||| ||||||||| ||||||||||| | Sbjct 133020135 TTCCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTG 133020076 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | ||| |||| |||| ||||| || || || ||||| || | || |||||||| | | Sbjct 133020075 ACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGG 133020016 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || || || ||| || || || | | || | |||| | ||||| Sbjct 133020015 GAATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAA 133019956 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || || | ||||| ||||| || ||||| Sbjct 133019955 CTTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| ||||||||| ||||| ||||| || Sbjct 133020589 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAG 133020530 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || | || || ||||| | || Sbjct 133020529 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGG 133020470 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || || || || || || || || | |||| || ||||| Sbjct 133020469 ATTCCTTCCTTATCCTGGATTTTTGCCTTTAC--ATTCTCAATTGTGTCACTGGGCTCAA 133020412 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | ||||||||||| |||||||| Sbjct 133020411 CTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 >seq1 Length=219802468 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||| | ||| ||| || |||||||| || || || Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||||| |||| ||||||||||| || || || || | | ||| ||||| | || Sbjct 160683787 AGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGGA 160683728 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || || || || || || ||| || || || || | |||| | ||||| Sbjct 160683727 ATGCCTTCTTTATCTTGGATTTTAGCTTTCAC--ATTCTCAATTGTGTCACTTGGCTCAA 160683670 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || | || ||||| || || |||||||| |||||||| |||||||| ||| Sbjct 160683669 CTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTTC 160683617 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||| ||| | ||| ||||||||||||||| ||||| || Sbjct 160685443 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAG 160685384 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || |||||||| | || |||||||| | || Sbjct 160685383 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGA 160685324 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || || || || || || || || | |||| | |||| Sbjct 160685323 ATGCCTTCCTTATCCTGGATTTTTGCCTTTAC--ATTCTCAATGGTGTCACTTGGTTCAA 160685266 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || ||||| || || || | ||||| ||||| |||||||| Sbjct 160685265 CTTCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| ||||| | ||| |||||||||||||| ||||| || ||| ||| |||| || Sbjct 160684058 AACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTC 160683999 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || | || |||||||| | || | || || ||||| Sbjct 160683998 CAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTG 160683939 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || || || || || || || | |||| | ||| || || | || || || Sbjct 160683938 GATTTTTGCCTTTAC--ATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTC 160683881 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||||||||| |||||||| Sbjct 160683880 TTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || ||| |||||||| |||||||| || ||| ||| | |||| ||| Sbjct 160684285 ACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCTTCC 160684226 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| || |||||||| | || || || || | || | || |||||||| Sbjct 160684225 AATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 160684166 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || || || || || || | |||| | |||||| || | || || || | Sbjct 160684165 ATTTTGGCCTTTAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTGTCT 160684108 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||| || ||||| Sbjct 160684107 TCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| |||||||||||| || ||||| || || | || |||| ||| Sbjct 160684741 ACCAAATGCAGAGTGGATTCTTTCTGAATATTGTAGTCAGAGAGAGTGCGGCCATCTTCC 160684682 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || | || ||| ||||| | || | || ||||| || Sbjct 160684681 AGCTGCTTGCCTGCAAAGATCAATCTTTGTTGGTCAGGAGGAATTCCTTCCTTATCCTGG 160684622 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | |||| | |||||| || | || ||||| | Sbjct 160684621 ATTTTAGCCTTGAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATGGTCT 160684564 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | ||||| ||||| |||||||| Sbjct 160684563 TCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684533 >seq4 Length=159726490 Score = 102 bits (112), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| || || ||||| |||||| | || |||| |||||||| || |||||||| Sbjct 6847659 TTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAA 6847600 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | ||||||||| | || | || || ||||| ||||| |||||| | Sbjct 6847599 GATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTTTGCTTTGAC--A 6847542 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| | ||| || || | ||| ||||| || || || || || || Sbjct 6847541 TTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTG 6847482 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 6847481 ACAAAGATCTGCAT 6847468 >seq3 Length=181146889 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| ||||| | || |||| |||||||| || |||||||| Sbjct 29378489 TCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAG 29378548 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||| |||||| | || | || || ||||| |||||| ||| || | Sbjct 29378549 ATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATTT 29378608 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 |||| | |||| | ||| || || | ||| ||||| || || || | ||| || ||| Sbjct 29378609 TCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACA 29378668 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 29378669 AAGATCTGCAT 29378679 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| |||| | || |||| |||||||| || |||||||| Sbjct 29378716 TTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 29378775 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | || |||||| | || | || || ||||| |||||| ||| ||| Sbjct 29378776 GATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTT 29378835 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| | |||| | ||| || || | ||| ||||| || || || || || || || Sbjct 29378836 TTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTAC 29378895 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 29378896 AAAGATCTGCATA 29378908 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| |||| ||| ||| ||||| || || || || | ||| | || |||| |||| Sbjct 29378928 CAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCA 29378987 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 |||| || |||||||| || | | ||||||||| | || | || || ||||| | Sbjct 29378988 GCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGA 29379047 Query 34894 TCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||| |||||| || || || | |||| | ||| || || | ||| ||||| || Sbjct 29379048 TCTTTGCTTTGAC--ATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTT 29379105 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||||||||||||||| Sbjct 29379106 GCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| || || ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 29377065 TTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 29377124 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | | || |||||| | || | || || || || |||||| ||| ||| Sbjct 29377125 GATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTCACGTT 29377184 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| | |||| | ||| || || | ||| ||||| || || || | ||| || || Sbjct 29377185 TTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29377244 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 29377245 GAAGATCTGCAT 29377256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324206170460424