Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12 123 3e-23 seq11 105 8e-18 seq10 102 9e-17 seq9 100 3e-16 seq3 93.3 5e-14 seq4 87.8 2e-12 >seq12 Length=128359586 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| |||| || || ||||| || | |||||||| || || ||||| | Sbjct 109014789 CCTCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 109014848 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| || | |||||| || ||||| |||||||| ||||||||||| ||||| | Sbjct 109014849 TTAGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATG 109014908 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||||||||| Sbjct 109014909 CCACGACTCTTTCTCC 109014924 >seq11 Length=155008753 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||||||| |||| || || ||||| || | |||||||| || || ||||| | Sbjct 132627298 CCTCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCT 132627357 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || | |||||| || ||||| || ||||| ||||||||||| | ||| | Sbjct 132627358 TCAGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGCGGAAAATG 132627417 Query 19103 CAACTAGTCTTTC 19115 | || | ||| || Sbjct 132627418 CCACCACTCTCTC 132627430 >seq10 Length=136570856 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||||||| || || | ||||||||||| || | ||| || Sbjct 119052163 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCTTC 119052104 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| || || || |||||||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 119052103 AGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATGCA 119052044 Query 19105 ACTAGTCTTTCTCC 19118 || | || ||| || Sbjct 119052043 ACAACTCGTTCACC 119052030 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/142 (73%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTT---CATTAGAATTCATTACTCCCAT 18668 ||| || ||| |||||| | ||||| || |||| | || || ||| || ||||| Sbjct 119053703 TTAGAAGTCAGCATCCAGTGTAAAAGTGTTGTCTTTTGCCTTGGA---CATAACACCCAT 119053647 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 || || ||||| ||||| | || ||||| || ||||| ||||| || ||||| || Sbjct 119053646 CTTCTGGTATTCTCCAACTTTCTTCTCAAAAAAGTTAGTCTTTCCTTCCAATGAGATGTT 119053587 Query 18729 TTCCATAAAATCAAATGGATTT 18750 |||||| || |||||||||||| Sbjct 119053586 TTCCATGAAGTCAAATGGATTT 119053565 >seq9 Length=159361991 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||| ||||| || || | ||||||||||| |||| ||| || Sbjct 138039858 TCATCTCTGCTAATAAGTTCGTTAGAGAAAGTGAGTCCAGGCATCAGCCCTCGTTTCTTC 138039799 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| ||||||||||| ||||| || || || ||||| || || ||||| || Sbjct 138039798 AGCCAGAATATGGAAGCAAATGAACCAGAGAAAAAGATCCCTTCAACAGCAGCAAAGGCC 138039739 Query 19105 ACTAG 19109 || || Sbjct 138039738 ACAAG 138039734 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||||||| || || | |||||||||||||| | ||| || Sbjct 138027422 TCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGTCCACGTTTCTTC 138027363 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||| || || || |||||||| || || ||||| || ||||| || || ||||| || Sbjct 138027362 AGCCAAAAAATGGATGCAAATGAACCGGAGAAGAAGATCCCTTCAACAGCAGCAAATGCC 138027303 Query 19105 ACTAGTCTTTCTCC 19118 || | || ||| || Sbjct 138027302 ACCACTCGTTCACC 138027289 >seq3 Length=181146889 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || || |||||||| || ||||| || | |||||||| || |||||||| || || ||| Sbjct 172440455 TGGAACTCTCCAGAGAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAT 172440396 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAA 47436 |||||||| || | ||||||||||| || ||||| ||||| | |||| Sbjct 172440395 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCTGTGGGCATTGGAGCAA 172440347 >seq4 Length=159726490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || || || ||||| || ||||| || | |||||||| || |||||||| || |||||| Sbjct 158378026 TGGAACTCGCCAGAAAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATAGAT 158378085 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 |||||||| || | ||||||||||| || || || ||||| Sbjct 158378086 TCATTATTGCCCAGGATTTGAGCAGTGGAAGCAGTGGGCAT 158378126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561349721250120