Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 111 2e-19 seq12 107 2e-18 seq16 96.9 4e-15 seq15 84.2 3e-11 seq9 82.4 9e-11 >seq10 Length=136570856 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | ||||||||| || || | ||| ||||| | || | ||| | Sbjct 119052165 CTTCATCTCTGCTAATAAGTTCATTAGAGAAAGTGAGTCCAGGCATCAGCCCCCGTTTCT 119052106 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | |||||| || | |||||| || ||||| ||||||||||||||||| || ||||||| Sbjct 119052105 TCAGCCAAAAAATGGATGCAAATGAGCCAGAGAAGAAAATACCTTCAACAGCAGCAAATG 119052046 Query 37318 CTACAA 37323 | |||| Sbjct 119052045 CAACAA 119052040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 |||||| ||||| || || |||||||||||| |||| || ||||| || |||||||||| Sbjct 119053658 CATAACACCCATCTTCTGGTATTCTCCAACTT-TCTTCTCAAAAAAGTTAGTCTTTCCTT 119053600 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | | ||| || |||||||| || ||||||||||| Sbjct 119053599 CCAATGAGATGTTTTCCATGAAGTCAAATGGATT 119053566 >seq12 Length=128359586 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| |||| || || |||||||| | ||| ||||| | ||| ||||| || Sbjct 109014791 TCATCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTT 109014850 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || ||||| ||||| || ||||| ||||| || ||||| ||||| |||||||| Sbjct 109014851 AGCCAGAAAATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGCC 109014910 Query 37320 AC 37321 || Sbjct 109014911 AC 109014912 >seq16 Length=98932710 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 |||||||| ||||| ||||||||| | ||||| ||| ||||| | || || || |||||| Sbjct 81835846 GGTGTTTTGCATACTAAATTTTGGGTTGTTGACAATGAACATTTTTACATTGGCAGTGCT 81835787 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAA 153378 |||||||| |||||||| ||||| || |||| Sbjct 81835786 AATATGGACTGGAGATCTCTAACACAGGTAA 81835756 >seq15 Length=120101378 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 153297 CATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATATGGAT 153356 ||||| ||||||||| | ||||| ||| ||||| | || || || |||||||||||||| Sbjct 56032670 CATACTAAATTTTGGGTTGTTGACAATGAACATTTCTACATTGGTAGTGCTAATATGGAC 56032611 Query 153357 TGGAGATCACTAACTCAAGTA 153377 |||||||| ||||| || ||| Sbjct 56032610 TGGAGATCTCTAACACAGGTA 56032590 >seq9 Length=159361991 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || ||||| || || ||||| ||||||| |||| || || || || |||||||||| Sbjct 138029369 CATGACACCCATCTTCTGGTATTCACCAACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 138029311 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGA 36967 | | || || |||||||| || |||||||||||||| Sbjct 138029310 CCAAAGAGATGTTTTCCATGAAGTCAAATGGATTAGA 138029274 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || ||||| || || ||||| |||||| |||| || || ||||| |||||||||| Sbjct 138044408 CATGACACCCATCTTCTGGTATTCACCAACTT-TCTTCTCAAAGAAATTGGTCTTTCCTT 138044350 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||| || || |||||||| || ||||||||||| Sbjct 138044349 CTAAGGAGATGTTTTCCATGAAGTCAAATGGATT 138044316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591516927989320