Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq1 96.9 3e-15 seq2 93.3 3e-14 >seq3 Length=181146889 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || |||||||| ||| | || | ||| | || |||| |||||| |||||||| Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||||| || | |||| ||| || ||||| ||||||| ||| ||| Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || | ||| ||||||| ||||| || || || |||||||||||||| Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 29378668 AAAGATCTGCAT 29378679 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | ||| | ||| || ||| || || || |||||||||||| | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| ||| ||| | | || || | ||| ||| Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACC 29379088 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || |||| ||||| ||||| |||||||| Sbjct 29379089 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | ||| | ||| | ||| || || || |||||||| ||| | Sbjct 29378680 GCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACA 29378739 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| |||||||| |||| | |||||| || | || Sbjct 29378740 AAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGG 29378799 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| || ||||| ||||||| ||| || | | | || | ||| || Sbjct 29378800 AATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTAC 29378859 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || || || |||| ||||||||||| |||||||| Sbjct 29378860 CTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 >seq1 Length=219802468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||||||||| ||||||||||| ||| | || | || |||| |||||| || ||||| Sbjct 160685180 CTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAA 160685121 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||||||||| | ||||| ||| || ||||| || ||| || ||| Sbjct 160685120 AATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATT 160685061 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || | || || || | ||||| || || || |||| ||||| || Sbjct 160685060 CTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCAC 160685001 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 160685000 AAATATCTGCATC 160684988 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| ||||| ||| | || | || |||| ||||||||| ||||| Sbjct 160684495 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 160684436 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| ||||| | |||| ||| || ||||| || ||| ||||||| Sbjct 160684435 ATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTT 160684376 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || | || || || | ||||| || || || || || || || ||| Sbjct 160684375 TCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACA 160684316 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 160684315 AATATCTGCAT 160684305 >seq2 Length=179946965 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| || || ||||||||||||||||| || ||| | || ||| Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || ||||| |||| || |||||||| | ||||| ||| |||||||| Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | || || | ||| ||||| | ||||| || || Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380436037675659