Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 1e-18
seq1 96.9 3e-15
seq2 93.3 3e-14
>seq3
Length=181146889
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || |||||||| ||| | || | ||| | || |||| |||||| ||||||||
Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| | ||||| || | |||| ||| || ||||| ||||||| ||| |||
Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || | ||| ||||||| ||||| || || || ||||||||||||||
Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667
Query 48755 AAAAATCTGCAT 48766
||| ||||||||
Sbjct 29378668 AAAGATCTGCAT 29378679
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| || || | ||| | ||| || ||| || || || |||||||||||| |
Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| |||||| |||||||| |||| | ||| || || | |||
Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| || ||||| |||||| ||| ||| | | || || | ||| |||
Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTTGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACC 29379088
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || || || |||| ||||| ||||| ||||||||
Sbjct 29379089 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 29379135
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | ||| | ||| | ||| || || || |||||||| ||| |
Sbjct 29378680 GCCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACA 29378739
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || |||| |||||| |||||||| |||| | |||||| || | ||
Sbjct 29378740 AAGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGG 29378799
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| ||| || ||||| ||||||| ||| || | | | || | ||| ||
Sbjct 29378800 AATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTAC 29378859
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| ||||| || || || |||| ||||||||||| ||||||||
Sbjct 29378860 CTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907
>seq1
Length=219802468
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||||||||| ||||||||||| ||| | || | || |||| |||||| || |||||
Sbjct 160685180 CTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAA 160685121
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| || ||||||||| | ||||| ||| || ||||| || ||| || |||
Sbjct 160685120 AATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATT 160685061
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || | || || || | ||||| || || || |||| ||||| ||
Sbjct 160685060 CTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCAC 160685001
Query 48755 AAAAATCTGCATC 48767
||| |||||||||
Sbjct 160685000 AAATATCTGCATC 160684988
Score = 87.8 bits (96), Expect = 1e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
||||||||||| ||||| ||||| ||| | || | || |||| ||||||||| |||||
Sbjct 160684495 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAA 160684436
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
|||| || ||| ||||| | |||| ||| || ||||| || ||| |||||||
Sbjct 160684435 ATCAATCTCTGCTGATCAGGAGGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTT 160684376
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || | || || || | ||||| || || || || || || || |||
Sbjct 160684375 TCAATTGTGTCACTTGGTTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACA 160684316
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 160684315 AATATCTGCAT 160684305
>seq2
Length=179946965
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| || || ||||||||||||||||| || ||| | || |||
Sbjct 133019431 ACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGACAGGGTTCTGCCATCTTCC 133019372
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| || || || ||||| |||| || |||||||| | ||||| ||| ||||||||
Sbjct 133019371 AATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGAATGCCTTCCTTGTCTTGG 133019312
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || || ||| | | || || | ||| ||||| | ||||| || ||
Sbjct 133019311 ATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCAACCTCAAGAGTAATTGTCTTC 133019252
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || ||||| ||||||||
Sbjct 133019251 CCTGTCAAGGTCTTCACAAATATCTGCAT 133019223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380436037675659
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |