Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 132 9e-26 seq21 109 1e-18 seq12 95.1 2e-14 seq11 95.1 2e-14 seq4 95.1 2e-14 seq3 95.1 2e-14 >seq1 Length=219802468 Score = 132 bits (146), Expect = 9e-26 Identities = 176/240 (73%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 241390 CTGACAGCC--TTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| ||| |||||| | |||||| | ||| |||||||||| ||| || ||| Sbjct 112064159 CTGGCAGCCGTTTGTCACATGG--CTCAGGACTTTCTGCTTGAGTTGGGACACTTGTTCC 112064102 Query 241448 CGCAGAACGGACGCGGTATTGGACA-GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTT 241506 | ||| | | ||||| || || |||| | ||| | ||||||||||| ||||| || Sbjct 112064101 CTCAGGAGGCTGGCGGTGGAGGCCAAGTCC-GAGTTTTGCGACTTGAGCACTTTCACCTT 112064043 Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 ||||||||||| ||||| || ||||| || | | ||||||||||| ||| || | || Sbjct 112064042 CTCCTCCAGCCTGGCGATACGCTCCAGCTTTCTCTTGCGGCATTTGGAGGCGGCGATTCG 112063983 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||| | || | ||| | ||||| ||||| || |||||| |||| ||||| || || Sbjct 112063982 GTTTCTCAGCCGCTTCCTCTCCGCTTTGATCCGCTCCTGGGTTTCCAGATCGATGGGGGA 112063923 >seq21 Length=6448305 Score = 109 bits (120), Expect = 1e-18 Identities = 172/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 241390 CTGACAGCCT-TGG-CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCC 241447 ||| ||||| ||| |||||| | || ||| | ||| || ||||||| ||| || ||| Sbjct 441718 CTGGCAGCCGCTGGTCACATGG--CTCATGACTTTCTGCTTCAGTTGGGACACTTGTTCC 441775 Query 241448 CGCAGAACGGACGCGGTATTGGACA-GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTT 241506 | ||| | | ||||| || || |||| | ||| | ||||||||||| ||||| || Sbjct 441776 CTCAGGAGGCTGGCGGTGGAGGCCAAGTCC-GAGTTTTGCGACTTGAGCACTTTCACCTT 441834 Query 241507 CTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCG 241566 ||||||||||| | ||| || ||||| || | | ||||||||||| || || | || Sbjct 441835 CTCCTCCAGCCTGGAGATACGCTCCAGCTTTCTCTTGCGGCATTTGGAAGCGGCGATTCG 441894 Query 241567 GTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||| | || | ||| | ||||| ||||| || |||||| |||| ||||| || || Sbjct 441895 GTTTCTCAGCCGCTTCCTCTCCGCTTTGATCCGCTCCTGGGTTTCCAGATCGATGGGGGA 441954 >seq12 Length=128359586 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 ||||| ||| ||||||| ||| ||| |||||||||| ||||| | || ||||||||| Sbjct 109014800 CTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTTAGCCAGAAA 109014859 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 ||||| || || || ||||||||||| || || || ||||| || || || Sbjct 109014860 ATTGCAGCAAAGGACCCAGAGAAGAATATTCCTTCTACTGCAGCAAATGC 109014909 >seq11 Length=155008753 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||| | ||||| ||| ||||||| ||| ||| |||||||||| ||||| | || Sbjct 132627300 TCGTCTCTACTGATCAGCTCGTTGGAAAAGGTGAGTCCAGGCATGAGACCCCTTTTCTTC 132627359 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGC 48264 |||||||||||||| || || ||||||||||| || || || || ||||| Sbjct 132627360 AGCCAGAAAATTGCAGCAAAGGAGCCAGAGAAAAATATTCCTTCTACTGC 132627409 >seq4 Length=159726490 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||||||| |||||| ||||||||||||||||| | | Sbjct 158379680 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCT-G 158379738 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||||| | ||| | |||||| |||||||| ||||| | || ||||| Sbjct 158379739 ATTGCTCTTGCGGTTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTC 158379792 >seq3 Length=181146889 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| ||||||||||| |||||| ||||||||||||||||| | | Sbjct 172430371 GTGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCT-G 172430313 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||||| | ||| | ||||||||| |||||||| || | || ||||| Sbjct 172430312 ATTGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTC 172430259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930274846462720