Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 3e-12 seq9 87.8 3e-12 seq12 84.2 4e-11 >seq11 Length=155008753 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || ||| | || || || || || |||||| || || ||||| || || |||| Sbjct 132627423 TGGTGGCATTTTCCGCAGTAGAAGGAATATTTTTCTCTGGCTCCTTTGCTGCAATTTTCT 132627364 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| | |||||| | |||||| || || ||||||||||||||| ||||| || Sbjct 132627363 GGCTGAAGAA-AAGGGGTCTCATGCCTGGACTCACCTTTTCCAACGAGCTGATCAGTAGA 132627305 Query 26002 GACGAGG 26008 ||||||| Sbjct 132627304 GACGAGG 132627298 >seq9 Length=159361991 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 |||||||| || || |||||||||||||| || || ||||||||| ||||| ||||| Sbjct 138039725 GGCGAGCGCCTTGTGGCCTTTGCTGCTGTTGAAGGGATCTTTTTCTCTGGTTCATTTGCT 138039784 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 |||| |||||||| ||| | ||| ||||| || || ||||| || ||||| || Sbjct 138039785 TCCATATTCTGGCTGAAGAAACGAGGGCTGATGCCTGGACT-CACTTTCTCTAACGAACT 138039843 Query 25992 CATCAGCAGGGACGA 26006 || ||||| || || Sbjct 138039844 TATTAGCAGAGATGA 138039858 >seq12 Length=128359586 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || |||||||| || || || || || ||| || || ||||| || || |||||| Sbjct 109014912 GTGGCATTTGCTGCAGTAGAAGGAATATTCTTCTCTGGGTCCTTTGCTGCAATTTTCTGG 109014853 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 || ||| | |||||| | |||||| || || ||||||||||||||| ||||| || || Sbjct 109014852 CTAAAGAA-AAGGGGTCTCATGCCTGGACTCACCTTTTCCAACGAGCTGATCAGTAGAGA 109014794 Query 26004 CGAGG 26008 |||| Sbjct 109014793 TGAGG 109014789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927590476371520