Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2 116 4e-21 seq1 104 3e-17 seq6 96.9 4e-15 >seq2 Length=179946965 Score = 116 bits (128), Expect = 4e-21 Identities = 527/818 (64%), Gaps = 22/818 (3%) Strand=Plus/Minus Query 160145 CACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTA 160204 || ||| || | |||||| | || |||||||| | ||| | || || || || || Sbjct 107266712 CAAGTCCCCTGCCCCGAATATACAAACGGAACGAACGTGATCCCCAGCACACGGGGGATA 107266653 Query 160205 CAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGC 160264 | |||||||| || || || ||||| |||||||||| |||||||| ||||| || Sbjct 107266652 TGGTGCTCCTTTGGCAACATCTCCTTCTAAGTACTGCCATTTCACAAATCTGGCATAAGC 107266593 Query 160265 CTGCATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCA 160323 | ||| || || || |||||| || || || || | ||| || || || || | Sbjct 107266592 GTTCATATCAGAAACATCATATTTGCT-ATTAGCTGGTACAGAACCCGGTACTCCAGGAA 107266534 Query 160324 TACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCA 160383 |||| || || |||||||| | | ||| || || ||||| || |||||||||||||| | Sbjct 107266533 TACGTTGAAGAGTGGCCCATATGAATTCATCAGGACTGTATGTATCCTTAGACCATTCTA 107266474 Query 160384 TGAACTCTCCGA--TTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGAC 160441 || | | || || | | | | || || | | |||| | | || || || | Sbjct 107266473 AAAAATGTTTGATCTTTTCATTTTC--CAAAATATAACTAACAAATGCTCGCGTTACAAT 107266416 Query 160442 AAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGG-CGTGTCTTTGTC-CTGA 160499 | |||| || || || || || || || | | ||| || |||| |||||| | Sbjct 107266415 ATAGTAGGCACTACCAGAAAACATTGGCGTCTCAAGAGGAGGAGGTGT-TTTGTCAGTTT 107266357 Query 160500 CCGGTGTTAGACACCACTCCTTTC-ACCAGCGCGTGTCGCTTCTTCCACCTGACCATC-T 160557 | | | | | | | | || || | | | | || ||||| || | || | Sbjct 107266356 CAGTTTTCCTAATGGAAT--TGTCAACAATTTCATAATGTTTTCGCCACC-GAACTTCTT 107266300 Query 160558 TGTGCGGTGGCATGCGTTCCGTCTCTAGACTG-TTGGCACCGTCGAGCGATTTCAGCTGC 160616 | || || ||||| | ||| || || || ||| || | || | | | ||| | | Sbjct 107266299 TATGTGGAGGCATTCTTTCAGTTTCCAGGCTGTTTTGACCCTTTAATCCCTTTAACATTA 107266240 Query 160617 TTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTAC 160676 | || |||||| | || || || | ||||| || |||| || | |||||| | ||| Sbjct 107266239 CT-ACCATCTCTTGATTTGTTTTTATTGGAAAATCCATACCACAGAGGTTTATTAAGTAT 107266181 Query 160677 TTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 ||||||| || | | ||| || || |||||||||| ||||| |||||||| | Sbjct 107266180 TTCCATTGTGCATTTTTATTGTGAAGATCTTTCATGCAATTTATATCAGCCTGCACCCTA 107266121 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 |||| || || || || || | |||| || || || | || || || || ||||| Sbjct 107266120 GTCCACGACGCATAGACCACACTTTCTAATTGGCTAGCAATGAACACATTTTCAAAACAA 107266061 Query 160797 GACACGATTCCCACCACCGC---CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGC 160853 || || || |||||| |||||| ||| | | || ||| || || Sbjct 107266060 GAAGTTATGGCCTTCACCGCATTCAGAAAAGACA---GAGAAGATTTCTTGTCGACATGA 107266004 Query 160854 ACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATC 160913 | ||| || |||||||| | ||| |||| | |||| |||||| | ||| || ||| Sbjct 107266003 ATGCAGTAGTAATTCTGAGGAGTGTATATGGAGCGCAGCAGCCTCTCAAGCATGTCAATC 107265944 Query 160914 TTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 |||| | || ||| || ||||| || || |||||||| Sbjct 107265943 CTATGGTAGACCACTATTGAGTATGCAATGGGAAACTC 107265906 >seq1 Length=219802468 Score = 104 bits (114), Expect = 3e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 160209 GCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGC 160268 |||||||| |||||||| ||||| | || ||||| |||||||| ||||| || | | Sbjct 130406238 GCTCCTTTGGCCACGTCTCCTTCTAAATATTGCCATTTCACAAATCTGGCATAAGCGTTC 130406179 Query 160269 ATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCATACG 160327 || || || || |||||| || || || || | ||| || || || || ||||| Sbjct 130406178 ATATCAGAAACATCATATTTGCT-ATTAGCTGGTACAGAACCCGGTACTCCAGGAATACG 130406120 Query 160328 CTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTC 160381 || || |||||||| | | |||||| || ||||||||||| ||||||||||| Sbjct 130406119 TTGAAGCGTGGCCCATATGAATTCGTCAGGACTGTACGTGTCTTTAGACCATTC 130406066 >seq6 Length=120483113 Score = 96.9 bits (106), Expect = 4e-15 Identities = 250/375 (67%), Gaps = 11/375 (3%) Strand=Plus/Minus Query 160571 GCGT-TCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 |||| || | ||| | ||||||| || | | ||||| || |||||| ||||| | Sbjct 55921181 GCGTCTCAGACTCCATACTGTTGTGGCCATTTAAAGATTTGAGAGCCTTGACCATCTCCA 55921122 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 ||| ||||| | |||||||| | || ||| || || | || ||||||| | || Sbjct 55921121 CGTTAGTCTTCAATGGAAAGTCTGCTCCACACGTATTAATGAGATATTTCCATTGCACGT 55921062 Query 160690 TCAGGTCGT--GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGC 160747 | | || | ||| ||| |||||| || | ||| || || || | | ||| || || Sbjct 55921061 T--GCTCTTCAGCAAGTCTTCCATGCAGTTGAGATCGGCTTGAACCCTCCGCCATGATGC 55921004 Query 160748 GTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC 160807 ||| || || | || || | |||||||| || || ||||| || || ||| | Sbjct 55921003 GTAGACCACACTTTCCAGCGTCGATGCCACAAACACATTGTCGAAGCAAGAAGTGATGGC 55920944 Query 160808 CACCACCGC---CAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAG 160864 | ||| || ||||||| | ||| | ||| |||||||| |||||||| | Sbjct 55920943 CCTCACGGCTTGCAGAAAGCTC-TCTGGG--GACTTCTTATCCACGTGAACGCAATAAAT 55920887 Query 160865 GTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGAT 160924 ||||| || | ||| | || || || | ||| ||||||||||| || || | ||||| Sbjct 55920886 ATTCTGGGGGGTGTAAACAGCTCTCAGAAGCCTTTCGAACATCTCAATATTGTCGTGGAT 55920827 Query 160925 CACGATAGAGTAGGC 160939 ||| ||||| || || Sbjct 55920826 CACCATAGAATAAGC 55920812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576439715977080