Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 2e-15 seq4 89.7 3e-13 >seq3 Length=181146889 Score = 96.9 bits (106), Expect = 2e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| || |||||||| ||||| |||| ||| || |||||| || || || Sbjct 172428918 CATAAAGAGATCAGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGCTCCTCCTT 172428859 Query 25993 TCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAAT 26051 ||| ||| ||||||||||| || | ||||||||| | ||| | ||||| ||||| | || Sbjct 172428858 TCCAGTG-TTCTTTTTTAGGTCCAGGAAATCAAACACATCATAATGCCACGGTTCCAGAT 172428800 Query 26052 AGATAGCAAA 26061 | || ||||| Sbjct 172428799 ATATGGCAAA 172428790 >seq4 Length=159726490 Score = 89.7 bits (98), Expect = 3e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| | ||| || |||||||| ||||| |||| ||| || |||||| || || || Sbjct 158380765 CATAAAGAGATCCGGTATCCACATGGCATAGAATAGATCCCTGGCTCTCTGCTCCTCCTT 158380824 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| |||||||||||| || | ||| ||||| | ||| | ||||| ||||| | || Sbjct 158380825 TCCAGTATTCTTTTTTAGGTCCAGGAATTCAAACACATCATAATGCCAAGGTTCCAGGTA 158380884 Query 26053 GATAGCAAA 26061 || ||||| Sbjct 158380885 TATGGCAAA 158380893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252706834330475