Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 seq9 84.2 3e-11 >seq10 Length=136570856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 65084 TTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTAT 65142 || |||| ||||| ||| || ||||| |||||||| || ||||| ||| | |||| | Sbjct 119052040 TTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGCTCATT-TGCATCCATTTTT 119052098 Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202 ||| ||||||| ||||| || ||||| || || ||||| |||||||||||| | || Sbjct 119052099 TGGCTGAAGAAACGGGGGCTGATGCCTGGACTCACTTTCTCTAATGAACTTATTAGCAGA 119052158 Query 65203 GATGA 65207 ||||| Sbjct 119052159 GATGA 119052163 >seq9 Length=159361991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 || ||||| ||| || || |||||||||||||| ||||| ||| | |||| |||| | Sbjct 138027304 GCATTTGCTGCTGTTGAAGGGATCTTCTTCTCCGGTTCATT-TGCATCCATTTTTTGGCT 138027362 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 |||||| || || || ||||| || || ||||| |||||||||||| | ||||||| Sbjct 138027363 GAAGAAACGTGGACTGATGCCTGGACTCACTTTCTCTAATGAACTTATTAGCAGAGATGA 138027422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595763984955040