Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq10 87.8 2e-12
seq9 84.2 3e-11
>seq10
Length=136570856
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 65084 TTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTAT 65142
|| |||| ||||| ||| || ||||| |||||||| || ||||| ||| | |||| |
Sbjct 119052040 TTGTTGCATTTGCTGCTGTTGAAGGTATTTTCTTCTCTGGCTCATT-TGCATCCATTTTT 119052098
Query 65143 TGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGA 65202
||| ||||||| ||||| || ||||| || || ||||| |||||||||||| | ||
Sbjct 119052099 TGGCTGAAGAAACGGGGGCTGATGCCTGGACTCACTTTCTCTAATGAACTTATTAGCAGA 119052158
Query 65203 GATGA 65207
|||||
Sbjct 119052159 GATGA 119052163
>seq9
Length=159361991
Score = 84.2 bits (92), Expect = 3e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147
|| ||||| ||| || || |||||||||||||| ||||| ||| | |||| |||| |
Sbjct 138027304 GCATTTGCTGCTGTTGAAGGGATCTTCTTCTCCGGTTCATT-TGCATCCATTTTTTGGCT 138027362
Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207
|||||| || || || ||||| || || ||||| |||||||||||| | |||||||
Sbjct 138027363 GAAGAAACGTGGACTGATGCCTGGACTCACTTTCTCTAATGAACTTATTAGCAGAGATGA 138027422
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595763984955040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |