Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 167 4e-36 seq2 149 1e-30 seq3 100 5e-16 >seq1 Length=219802468 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | ||||| |||| |||| |||| || || |||||||||||| Sbjct 160684306 ATGCCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCT 160684247 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || |||||||| || ||||| || ||||||||||||||||| Sbjct 160684246 GACAGGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGG 160684187 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||| |||| ||| |||||| || | |||| Sbjct 160684186 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCA 160684127 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| ||||| || || || ||||| || || || |||||||||||||| Sbjct 160684126 ACTTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | ||||| || | ||||| || | ||||| ||| || ||||| Sbjct 160684534 ATCCCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCA 160684475 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || |||||||| |||||||| ||||||||| Sbjct 160684474 GAAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGA 160684415 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | ||||| |||| ||| || || | ||| Sbjct 160684414 GGAATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCA 160684355 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| || || || || || || |||| || || |||||||| ||||| Sbjct 160684354 ACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | ||||| || | ||||| || | |||||| ||| || || || Sbjct 160685218 ATCCCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCA 160685159 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || |||||||| ||||||||||||||||| Sbjct 160685158 GAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGG 160685099 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||| | || | ||| ||| || || | ||| Sbjct 160685098 GGAATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCA 160685039 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||||||||| || || || || || || ||||| |||||||| ||||| Sbjct 160685038 ACTTCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989 Score = 114 bits (126), Expect = 2e-20 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| || || |||| |||| || | || || ||| || || || Sbjct 160683850 ATCCCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCT 160683791 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| ||| || | ||||| || || || || || || ||||| ||||| Sbjct 160683790 GACAGGGTTCGTCCATCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGG 160683731 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||||||||| ||||| | ||| | ||| ||| || || | |||| Sbjct 160683730 GGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCA 160683671 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttattagta 193370 ||||| || || || || || || || || ||||| |||||||| ||||| || || | | Sbjct 160683670 ACTTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTTCTTTGAA 160683611 Query 193371 aaa 193373 ||| Sbjct 160683610 AAA 160683608 >seq2 Length=179946965 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| |||| || | || || |||||| || || Sbjct 133019452 ATCCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCA 133019393 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || |||||||| || ||||| || ||||| ||||||||||| Sbjct 133019392 GACAGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGG 133019333 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||||| || | ||| |||||||||| || |||| Sbjct 133019332 GGAATGCCTTCCTTGTCTTGGATTTTGGCCTTGACATTCTCAATAGTATCGCTAGGCTCA 133019273 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || ||||| || || || ||||| | || || |||||||| ||||| Sbjct 133019272 ACCTCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCAT 133019223 Score = 143 bits (158), Expect = 5e-29 Identities = 216/306 (71%), Gaps = 12/306 (4%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| |||| || | || || ||| |||||||| Sbjct 133019224 ATGCCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCT 133019165 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||| | ||| || | ||||| || |||||||| || || ||||| || ||| Sbjct 133019164 GACAGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGA 133019105 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || ||||| | || | ||| ||||||||| | |||| Sbjct 133019104 GGAATGCCTTCTTTATCCTGAATTTTAGCCTTCACATTCTCAATAGTATCACTTGGCTCA 133019045 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcattttat---ta 193367 |||||||| || || || || || || || ||||| |||||||| ||||| || | | Sbjct 133019044 ACTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATGTTCTGTAAA 133018985 Query 193368 gtaaaataat-----tattttaaataatatatactttatattttaacattatattataCA 193422 | |||| ||| | ||||| || || ||| |||||| || | || | |||| Sbjct 133018984 GAAAAAAAATATATATTTTTTACATTGTAGATAATTTATA----AAAAGTAAAACATACT 133018929 Query 193423 ATGAAA 193428 |||||| Sbjct 133018928 ATGAAA 133018923 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||| | ||||| |||| |||| || | || || |||||| ||||| Sbjct 133020364 ATCCCACCTCTGAGACGAAGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCA 133020305 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||| ||| || | ||| || || ||||||||||||||||| || ||||| Sbjct 133020304 GACAGTGTTCTGCCATCTTCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGG 133020245 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| ||||||| ||||| |||| ||| || || | ||| Sbjct 133020244 GGAATGCCTTCTTTGTCTTGGATTTTGGCTTTTACATTTTCAATTGTGTCACTTGGTTCA 133020185 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatt 193361 || || || || || || || || |||| || || ||||||||||||||| Sbjct 133020184 ACCTCAAGGGTAATTGTCTTCCCAGTTAATGTCTTGACAAATATTTGCATT 133020134 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || |||||||||| || || || | ||||| || | ||||| || ||| Sbjct 133020142 ATTTGCATTCCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTA 133020083 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | |||| ||| || | ||| || || |||||||| |||||||| || Sbjct 133020082 TAGTCTGACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGG 133020023 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||||||||| || ||||| | || | |||| ||| || || Sbjct 133020022 TCAGGGGGAATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTT 133019963 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 | ||||||||| || || || |||||||| |||| || || |||||||||||||| Sbjct 133019962 GGCTCAACTTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || || ||||| ||||| || || ||||| || | || | ||||| || || ||| Sbjct 133020595 TAAATCCCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAG 133020536 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 || || | || | | ||| || | || || || ||||| || ||||||||||| ||| Sbjct 133020535 TCAGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCA 133020476 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 ||||| |||||||| ||||| || ||||| | |||| ||| ||| || || | | Sbjct 133020475 GGAGGGATTCCTTCCTTATCCTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGC 133020416 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 |||||||| || || || || || || |||| || || |||||||| ||||| Sbjct 133020415 TCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 >seq3 Length=181146889 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| |||| |||||||| |||||||| || | || || ||||| ||||| | Sbjct 29377029 ACCACCCCTCAGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACA 29377088 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| || | || || || ||||| || || |||||||| || ||||| Sbjct 29377089 AAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGG 29377148 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| || || | ||| | ||| || || || | ||| || Sbjct 29377149 AATGCCTTCTTTATCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTAC 29377208 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| || || || || || || | |||||||| || || ||||| Sbjct 29377209 CTCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCAT 29377256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898439495452560