Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 129 9e-25 seq1 129 9e-25 seq3 107 3e-18 >seq2 Length=179946965 Score = 129 bits (142), Expect = 9e-25 Identities = 145/193 (75%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| |||||| | ||||| | ||||| || || || ||| ||||||| || Sbjct 133018992 AACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCA 133019051 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| |||| || ||||| |||||| || |||||||||||||| |||||||| Sbjct 133019052 AGTGATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGAC 133019111 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||| ||||||| ||| || || ||||| |||||| |||| | ||||| ||| Sbjct 133019112 CAACAAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTAT 133019171 Query 156000 AATATATCCAAAG 156012 || || || |||| Sbjct 133019172 AACAT-TCAAAAG 133019183 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||| |||| || || || ||||| | || || || | Sbjct 133019679 ATGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGT 133019738 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| ||||| || |||||||| || || || ||| Sbjct 133019739 GATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAA 133019798 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| ||||||||||| |||||| ||||| |||| || || ||| Sbjct 133019799 CAAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAAT 133019858 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| ||||| | || || ||||| || Sbjct 133019859 ATACAGAAAGAATCAACCCTGCATTTGGT 133019887 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||| |||| || || || ||||| | || || || | Sbjct 133019451 ATGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGT 133019510 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| ||||| ||||| || |||||||| || || || ||| Sbjct 133019511 GATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAA 133019570 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| ||||||||||| |||||| ||||| |||| || || ||| Sbjct 133019571 CAAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAAT 133019630 Query 156003 ATA 156005 ||| Sbjct 133019631 ATA 133019633 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||||| ||||| || || ||||| | || || ||| Sbjct 133020134 AATGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAG 133020193 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| ||| || ||| ||||| ||||| ||||||||||| || || || || Sbjct 133020194 TGACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCA 133020253 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||||| |||| ||| |||||||| || |||||| |||||| | || || || || Sbjct 133020254 GCAGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAA 133020313 Query 156002 TAT 156004 ||| Sbjct 133020314 TAT 133020316 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || || ||||| ||||| ||||| | ||||| || | Sbjct 133019907 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACCATTACCCTTGAAGTTGAGCCAAGT 133019966 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||||| || ||||||||||| || || || || || Sbjct 133019967 GACACAATTGAAAATGTTAAGGCAAAAATTCAGGATAAAGAAGGTATTCCCCCTGACCAG 133020026 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || ||||| || |||||| | |||| | ||||| ||||| Sbjct 133020027 CAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGATGGCCGAACCCTGTCAGACTATAAC 133020086 Query 156003 AT 156004 || Sbjct 133020087 AT 133020088 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| || || || ||||| | || || || | Sbjct 133019223 ATGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTTGAGCCTAGC 133019282 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| ||||| || |||||||| || || || ||| Sbjct 133019283 GATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 133019342 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || || || | |||||| |||||| | || ||||| ||| Sbjct 133019343 CAAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAAT 133019402 Query 156003 AT 156004 || Sbjct 133019403 AT 133019404 >seq1 Length=219802468 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || || ||||| ||||| ||||| | ||||| ||| | Sbjct 160684761 ATGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGT 160684820 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| ||||| ||||| ||||||||||| || || || || Sbjct 160684821 GACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAG 160684880 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| |||||||| || |||||| |||||| | || || || ||| Sbjct 160684881 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAAT 160684940 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || | || ||||| Sbjct 160684941 ATTCAGAAAGAGTCAACCTTGCACTTAGT 160684969 Score = 116 bits (128), Expect = 5e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | |||||| |||| || || || ||||| ||||||| ||| | Sbjct 160684989 ATGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 160685048 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||||||||| || || || ||| Sbjct 160685049 GACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAA 160685108 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| || |||||||| |||||| | | ||| | || ||||| || Sbjct 160685109 CAGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 160685168 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || | || ||||| Sbjct 160685169 ATTCAAAAAGAGTCCACCTTGCACTTAGT 160685197 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || || ||||| || || ||||| | ||||| ||| | Sbjct 160684305 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGT 160684364 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||||| ||||| ||||||||||| ||||| || || Sbjct 160684365 GACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAG 160684424 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| ||||||||||| |||||| | | ||| | || || || || Sbjct 160684425 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 160684484 Query 156003 AT 156004 || Sbjct 160684485 AT 160684486 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || || ||||| || || ||||| | ||||| || | Sbjct 160684533 ATGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACTCTTGAAGTTGAGCCAAGT 160684592 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || |||||| || ||||| ||||| || ||||| || ||| Sbjct 160684593 GACACTATTGAGAATGTCAAGGCTAAAATCCAGGATAAGGAAGGAATTCCTCCTGACCAA 160684652 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || |||||||| |||||| | | ||| | || || || ||| Sbjct 160684653 CAAAGATTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAT 160684712 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || ||||| || Sbjct 160684713 ATTCAGAAAGAATCCACTCTGCATTTGGT 160684741 Score = 102 bits (112), Expect = 1e-16 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || ||||| |||||| | ||||| | ||||| || || || ||| | ||||| || Sbjct 160683615 AAGAACATGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAG 160683674 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| | ||| || |||||| |||||| ||||||||||||||||| || || Sbjct 160683675 CCAAGTGACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCT 160683734 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||||| ||||| | || || || ||||| || ||| |||| | |||||| Sbjct 160683735 GACCAACAAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGAT 160683794 Query 155997 TATAATATATCCAAAG 156012 || || || || |||| Sbjct 160683795 TACAACAT-TCAAAAG 160683809 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || |||| || || || ||||| | || || || | Sbjct 160683849 ATGCAGATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAGGTGGAGCCAAGT 160683908 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| ||||| |||||||| || || || || || Sbjct 160683909 GACACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 160683968 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||||| ||| ||||||||||| |||||| |||||| | ||||| || || Sbjct 160683969 CAGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCAGAACCCTGTCAGACTACAAC 160684028 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || | || ||||| Sbjct 160684029 ATTCAGAAAGAGTCCACCTTGCACTTAGT 160684057 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || |||| || || || ||||| | ||||| || | Sbjct 160684077 ATGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGT 160684136 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || ||||| ||||| || |||||||| || || || ||| Sbjct 160684137 GACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAA 160684196 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||| || || || | |||||| ||||| | ||||| |||||| Sbjct 160684197 CAGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAAT 160684256 Query 156003 AT 156004 || Sbjct 160684257 AT 160684258 >seq3 Length=181146889 Score = 107 bits (118), Expect = 3e-18 Identities = 120/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC- 155881 ||||| || ||| | ||||| |||||||| || || ||||| | || || ||| || Sbjct 29378679 ATGCAGATCTTTGTAAAAACTTTGACTGGCAAGACCATTACCCTGGAGGT---AGAGTCA 29378623 Query 155882 --TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||| | || ||| |||||| || || ||||| ||||||||||| |||||||| Sbjct 29378622 AGTGACACCATAGAAAATGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGAC 29378563 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||||| ||||| | |||||| |||||||| |||||| Sbjct 29378562 CAACAAAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGAT 29378524 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| |||||||| || || ||||| |||| || || | Sbjct 29377256 ATGCAGATCTTCGTAAAAACTTTGACTGGCAAGACCATTACCCTAGAGGTAGAGCCAAGT 29377197 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||||| || || ||||||||||||||||| |||||||| ||| Sbjct 29377196 GACACCATAGAAAACGTGAAATCAAAGATTCAAGATAAAGAAGGCATTCCTCCAGACCAA 29377137 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | ||| || |||||||| |||||| Sbjct 29377136 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGAT 29377101 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||| || || ||||| | || || || | Sbjct 29378907 ATGCAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29378848 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||||| || || ||||| ||||||||||| |||||||| ||| Sbjct 29378847 GACACCATAGAAAACGTGAAATCAAAGATTCAAGACAAAGAAGGCATTCCTCCAGACCAA 29378788 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| |||||||| |||||| Sbjct 29378787 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGAT 29378752 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||||| || || ||||| | || || || | Sbjct 29379135 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATTACCCTGGAGGTAGAGCCAAGT 29379076 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || ||| || || ||||| ||||||||||| |||||||| || Sbjct 29379075 GACACTATTGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 29379016 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||| |||||||| |||||| Sbjct 29379015 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGAT 29378980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730883670902800