Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 132 3e-26 seq3 129 4e-25 seq1 123 2e-23 seq4 120 2e-22 >seq2 Length=179946965 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||||||| | |||| || ||||| ||||| ||||| || Sbjct 133020589 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAG 133020530 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||||| || || ||||| | || Sbjct 133020529 AGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGG 133020470 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | |||||| || || || || || | ||| ||| ||| | Sbjct 133020469 ATTCCTTCCTTATCCTGGATTTTTGCCTTTAC--ATTCTCAATTGTGTCACTGGGCTCAA 133020412 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||||||| || || | |||||| ||||| |||||||| Sbjct 133020411 CTTCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | || || | ||| | |||| || ||||| ||||||||||| | Sbjct 133020135 TTCCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTG 133020076 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || |||| ||||||||||| || || || |||| || |||||||| | | Sbjct 133020075 ACAGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGG 133020016 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | | || || || || | |||||| || || | | || | ||| | | ||| | Sbjct 133020015 GAATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAA 133019956 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| ||||| || || || | |||||| ||||| || ||||| Sbjct 133019955 CTTCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| ||| | ||| ||||| |||||||||||||| || Sbjct 133019221 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTATAGTCTGAC 133019162 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| || || || || || |||| | ||| |||||| | || Sbjct 133019161 AGGGTTCGACCATCTTCCAGCTGTTTGCCAGCAAAAATCAACCTTTGTTGGTCTGGAGGA 133019102 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | ||||| || || || || || | ||| | | ||| | Sbjct 133019101 ATGCCTTCTTTATCCTGAATTTTAGCCTTCAC--ATTCTCAATAGTATCACTTGGCTCAA 133019044 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || |||||||| || ||||| || || ||||| ||||||||| Sbjct 133019043 CTTCTAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCATG 133018994 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| ||| | ||| ||||||||||| || || || || Sbjct 133019449 CCACCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAATCAGAC 133019390 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| |||| ||| || || || ||||||| || ||| || || | || Sbjct 133019389 AGGGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAGATCAATCTTTGTTGATCAGGGGGA 133019330 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | ||||| ||||| || || || | || | | ||| | Sbjct 133019329 ATGCCTTCCTTGTCTTGGATTTTGGCCTTGAC--ATTCTCAATAGTATCGCTAGGCTCAA 133019272 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | |||| || || ||||| || || | |||||| ||||| ||||||||| Sbjct 133019271 CCTCAAGAGTAATTGTCTTCCCTGTCAAGGTCTTCACAAATATCTGCATG 133019222 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||||| || ||||| || || | | |||| Sbjct 133020346 AGGACCAAGTGCAGAGTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCT 133020287 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| || || || || | || |||||||| | || | || || ||||| Sbjct 133020286 TCCAGTTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCT 133020227 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| || | | || | ||| | | || || |||| ||| || ||| Sbjct 133020226 TGGATTTTGGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTC 133020167 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || | ||||| ||||| || ||||| Sbjct 133020166 TTCCCAGTTAATGTCTTGACAAATATTTGCAT 133020135 >seq3 Length=181146889 Score = 129 bits (142), Expect = 4e-25 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || || |||| |||| |||||||| || || || || | Sbjct 29378909 CCACCCCTCAGACGAAGCACAAGATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAG 29378968 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| ||||| ||||||| | ||||||||| | || Sbjct 29378969 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 29379028 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || ||| |||||| || || || | ||| | | ||| | Sbjct 29379029 ATGCCTTCTTTGTCTTGGATCTTTGCTTTGAC--ATTCTCAATAGTGTCACTTGGCTCTA 29379086 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | || | ||| |||||||| || || ||||| || ||||||||||||||||| Sbjct 29379087 CCTCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGAT 29379138 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || || || | |||| |||||||| || || ||||| | Sbjct 29378681 CCACCCCTCAGACGAAGCACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAA 29378740 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||| ||||||| | || |||||| | || Sbjct 29378741 AGCGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGA 29378800 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || ||| ||| ||| | |||| | ||| | | ||| || Sbjct 29378801 ATGCCTTCTTTGTCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACC 29378860 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || ||||| ||||||||||||||||| Sbjct 29378861 TCCAGGGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || || || | |||| |||||||| || || ||||| | Sbjct 29377030 CCACCCCTCAGACGAAGTACAAGATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAA 29377089 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| || || ||||||| | || |||||| | || Sbjct 29377090 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 29377149 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || ||| ||| ||| | |||| | ||| | | ||| || Sbjct 29377150 ATGCCTTCTTTATCTTGAATCTTTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACC 29377209 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || | || ||||| |||||||||||| Sbjct 29377210 TCTAGGGTAATGGTCTTGCCAGTCAAAGTTTTTACGAAGATCTGCATG 29377257 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || || ||||| | ||| |||| |||| ||||| ||||| ||||| || Sbjct 29378488 CTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 29378547 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| | ||| |||||| | || | || || ||||| | || ||| ||| || Sbjct 29378548 GATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTCACATT 29378607 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| | ||| | | ||| || || | ||| |||||||| || || | || ||||| Sbjct 29378608 TTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTTTTTAC 29378667 Query 34966 AAAGATCTGCATG 34978 ||||||||||||| Sbjct 29378668 AAAGATCTGCATG 29378680 >seq1 Length=219802468 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||||||| | |||| || ||||||||||| ||||| || Sbjct 160685443 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAG 160685384 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || || |||| || |||||||| | || Sbjct 160685383 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAATATCAATCTCTGCTGGTCAGGGGGA 160685324 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | |||||| || || || || || | ||| | | || | Sbjct 160685323 ATGCCTTCCTTATCCTGGATTTTTGCCTTTAC--ATTCTCAATGGTGTCACTTGGTTCAA 160685266 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || |||||||| || || | |||||| ||||| |||||||| Sbjct 160685265 CTTCAAGAGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160685217 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || | ||| | |||| ||| ||||||||||| ||||| || ||| | | |||| Sbjct 160684060 AGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCT 160684001 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || || || |||| || |||||||| | || | || || ||||| Sbjct 160684000 TCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCT 160683941 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | |||||| || || || || || | ||| | | ||| || |||| || || | Sbjct 160683940 TGGATTTTTGCCTTTAC--ATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTG 160683883 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| ||||| |||||||| Sbjct 160683882 TCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||||| |||||||| || ||| | | |||| Sbjct 160684288 AGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGACAGGGTTCTTCCATCT 160684229 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||| || || || || |||| || || || || | || | || |||||||| Sbjct 160684228 TCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGGAATGCCTTCCTTGTCT 160684169 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| || || || || || | ||| | | ||| || |||| || || | Sbjct 160684168 TGGATTTTGGCCTTTAC--ATTCTCAATAGTGTCACTTGGCTCAACTTCAAGAGTAATTG 160684111 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| ||||| || ||||| Sbjct 160684110 TCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077 >seq4 Length=159726490 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || || || | ||| || ||||| || || ||||| || Sbjct 6847694 CCACCCCTCAGACGAAGCACAAGATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAA 6847635 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| ||||| ||||||| | ||||||||| | || Sbjct 6847634 AGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 6847575 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || ||||| | || ||| |||||| || || || | ||| | | ||| | Sbjct 6847574 ATACCTTCTTTGTCTTGGATCTTTGCTTTGAC--ATTCTCAATAGTGTCACTTGGCTCTA 6847517 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || ||||| || |||||||||||||| Sbjct 6847516 CCTCTAGGGTAATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 6847468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325263975862427