Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 1e-28
seq1 132 8e-26
>seq2
Length=179946965
Score = 141 bits (156), Expect = 1e-28
Identities = 167/226 (74%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || || ||||| || ||||||||| |||| || || | || ||
Sbjct 133019224 TGCAGATATTTGTGAAGACCTTGACAGGGAAGACAATTACTCTTGAGGTTGAGCCTAGCG 133019283
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || ||||| ||| || ||||||||||| || |||||||
Sbjct 133019284 ATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAAC 133019343
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| || |||||||| || ||| ||||| | | ||||| ||||
Sbjct 133019344 AAAGATTGATCTTTGCTGGCAAACAATTGGAAGATGGCAGAACCCTGTCTGATTACAATA 133019403
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || || ||||| ||| | || || || | || || ||||| ||
Sbjct 133019404 TTCAGAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019449
Score = 136 bits (150), Expect = 6e-27
Identities = 173/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | |||||| | ||||| || ||||||||| |||| ||||| | | |
Sbjct 133019680 TGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGTG 133019739
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || ||||| ||| || ||||||||||| || || ||||
Sbjct 133019740 ATACTATTGAGAATGTCAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAAC 133019799
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| ||||| || | || ||| ||||| || | || || ||||
Sbjct 133019800 AAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAATA 133019859
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269
|||| |||||||| || | ||||| || | || | ||||| || | |||||||
Sbjct 133019860 TACAGAAAGAATCAACCCTGCATTTGGTTCTCCGTCTGAGAGGTGGGATGCAAATATT 133019917
Score = 132 bits (146), Expect = 8e-26
Identities = 165/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | |||||| | ||||| || ||||||||| |||| ||||| | | |
Sbjct 133019452 TGCAGATATTTGTGAAAACACTGACAGGGAAGACAATTACTCTTGAGGTAGAGCCAAGTG 133019511
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| ||| ||||| ||| || ||||||||||| || || ||||
Sbjct 133019512 ATACTATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAAC 133019571
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
||||| | || ||||| ||||| || | || ||| ||||| || | || || ||||
Sbjct 133019572 AAAGATTGATCTTTGCTGGTAAGCAGCTGGAAGATGGGAGAACACTATCTGACTACAATA 133019631
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|||| || ||||| ||| | || || || | || | ||||| ||
Sbjct 133019632 TACAGAAGGAATCTACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 133019677
Score = 129 bits (142), Expect = 9e-25
Identities = 164/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | || |||||||| || || |||||||| |||| || |||| | |
Sbjct 133020136 TGCAAATATTTGTCAAGACATTAACTGGGAAGACAATTACCCTTGAGGTTGAACCAAGTG 133020195
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||||||| ||||| ||| |||||||||||||| || || || |
Sbjct 133020196 ACACAATTGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 133020255
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| ||||| ||| | || ||| ||||| | | || || ||||
Sbjct 133020256 AGAGATTAATTTTTGCTGGTAAGCAACTGGAAGATGGCAGAACACTGTCTGACTACAATA 133020315
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || || ||||| ||| | || || || | || | ||||| ||
Sbjct 133020316 TTCAGAAGGAATCCACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 133020361
Score = 111 bits (122), Expect = 2e-19
Identities = 160/226 (71%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || || || || || | || || || | | |
Sbjct 133018996 TGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTAGAAGTTGAGCCAAGTG 133019055
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||||||| | ||||| || |||||| || ||||||||||||||| || || ||||
Sbjct 133019056 ATACTATTGAGAATGTGAAGGCTAAAATTCAGGATAAAGAAGGCATTCCTCCAGACCAAC 133019115
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||| | |||||||| || ||||| | || ||| | |||| | |||| ||||| |
Sbjct 133019116 AAAGGTTGATTTTTGCTGGCAAACAGCTGGAAGATGGTCGAACCCTGTCAGACTATAACA 133019175
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| ||||| ||||| ||| | || || || | || || ||||| ||
Sbjct 133019176 TTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGTGG 133019221
>seq1
Length=219802468
Score = 132 bits (146), Expect = 8e-26
Identities = 165/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | || || ||||| || |||||||||||| |||| || |||| | |
Sbjct 160684762 TGCAAATATTTGTCAAGACCTTAACTGGTAAAACAATTACTCTTGAAGTTGAACCAAGTG 160684821
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| |||| |||||| ||||| ||| |||||||||||||| || || || |
Sbjct 160684822 ACACAATTGAAAACGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGACCAGC 160684881
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| ||||| ||| |||| ||| ||||| | | || || ||||
Sbjct 160684882 AGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGCAGAACCCTGTCTGACTACAATA 160684941
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || ||||| || || | || ||||| | || | ||||| ||
Sbjct 160684942 TTCAGAAAGAGTCAACCTTGCACTTAGTTCTTCGTCTGAGAGGTGG 160684987
Score = 129 bits (142), Expect = 9e-25
Identities = 164/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||||||||| | || || | ||||| || ||||||||| |||| || || | | |
Sbjct 160684078 TGCAAATATTTGTGAAGACCCTGACAGGGAAGACAATTACTCTTGAAGTTGAGCCAAGTG 160684137
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| |||||| | |||||||| ||||| ||| || ||||||||||| || |||||||
Sbjct 160684138 ACACTATTGAGAATGTAAAGGCCAAAATCCAAGACAAGGAAGGCATTCCCCCTGATCAAC 160684197
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | || ||||| || |||||||| || ||| ||||| | |||| |||||||
Sbjct 160684198 AGAGATTGATATTTGCTGGCAAACAATTGGAAGATGGAAGAACCCTGTCAGACTATAATA 160684257
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| || || ||||| ||| | || || || | || | ||||| ||
Sbjct 160684258 TTCAGAAGGAATCTACTCTGCACTTGGTCCTTCGTCTCAGAGGTGG 160684303
Score = 111 bits (122), Expect = 2e-19
Identities = 160/226 (71%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | || || ||||| || || || ||||| |||| || |||| | |
Sbjct 160684306 TGCAGATATTTGTCAAGACCTTAACTGGGAAGACCATTACCCTTGAAGTTGAACCAAGTG 160684365
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||||||| ||||| ||| |||||||||||||| || ||||| |
Sbjct 160684366 ACACAATTGAAAATGTAAAAGCAAAAATCCAAGACAAAGAAGGCATTCCTCCTGATCAGC 160684425
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| ||||| || | || ||| | || | | || || || |
Sbjct 160684426 AGAGATTGATTTTTGCTGGTAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 160684485
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| ||||||||||| || | || ||||| | || | ||||| ||
Sbjct 160684486 TTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 160684531
Score = 102 bits (112), Expect = 1e-16
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || || || || || |||| || || | | |
Sbjct 160683622 TGCAGATATTTGTGAAAACTCTCACTGGGAAGACCATCACACTTGAAGTTGAGCCAAGTG 160683681
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| ||| |||||| ||| ||||||||||||||| || || ||||
Sbjct 160683682 ACACAATTGAGAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCCCCTGACCAAC 160683741
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|||| | || || || || ||||| | || ||| |||| | ||||||| || |
Sbjct 160683742 AAAGGTTGATCTTCGCTGGCAAACAGCTGGAGGATGGACGAACCCTGTCAGATTACAACA 160683801
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| ||||| ||||| ||| | || || || | || || ||||| ||
Sbjct 160683802 TTCAAAAGGAATCCACTCTGCACTTGGTTCTCCGTTTGAGAGGGGG 160683847
Score = 102 bits (112), Expect = 1e-16
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | |||||| | || || || ||||||||| | || || |||| | |
Sbjct 160684990 TGCAGATATTTGTGAAAACACTGACCGGGAAGACAATTACTCTAGAAGTTGAACCAAGTG 160685049
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || ||||| ||| |||||||||||||| || |||||||
Sbjct 160685050 ACACCATTGAGAATGTTAAGGCAAAAATCCAAGACAAAGAAGGCATTCCCCCTGATCAAC 160685109
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| ||| | |||||||| || || || | || ||| | || | | ||||| || |
Sbjct 160685110 AGAGATTGATTTTTGCTGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACA 160685169
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
| |||||||| || || | || ||||| | || | ||||| ||
Sbjct 160685170 TTCAAAAAGAGTCCACCTTGCACTTAGTTCTTCGTCTCAGAGGTGG 160685215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785104751066360
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |