Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09]
108,033 sequences; 2,718,433,805 total letters
Query= NC_023681.1
Length=152710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 8e-23
seq3 98.7 1e-15
seq2 98.7 1e-15
>seq1
Length=219802468
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | |||||| || | || ||||||||||| |||||||| ||
Sbjct 160684531 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGATTCTTTTTGAATGTTGTAGTCAGAA 160684472
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||||| || || ||||||||| | |||| | |||||||| |||||
Sbjct 160684471 AGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGATCAGGAGGA 160684412
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|||||||||||||| |||||| ||||| | ||| | ||||| | ||||| |||
Sbjct 160684411 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACATTTTCAATTGTGTCACTTGGTTCAACT 160684352
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| || | ||||| || || || || || || ||||| |||||
Sbjct 160684351 TCAAGGGTAATGGTCTTCCCAGTTAAGGTCTTGACAAATATCTGCAT 160684305
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | |||||| || | || || ||||| || || ||||| || |
Sbjct 160684987 CCACCTCTCAGACGAAGAACTAAGTGCAAGGTTGACTCTTTCTGAATATTGTAGTCAGAC 160684928
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| ||||| ||||||||| | |||| | ||||| || || ||
Sbjct 160684927 AGGGTTCTGCCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160684868
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|||||||||||||| |||||| ||||| | ||| | ||||| | ||||| |||
Sbjct 160684867 ATGCCTTCTTTGTCTTGGATTTTTGCTTTTACGTTTTCAATTGTGTCACTTGGTTCAACT 160684808
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| ||| | || || || || || || || || |||||||||||
Sbjct 160684807 TCAAGAGTAATTGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 160684761
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | |||||| || | || || |||||||| |||||||||||
Sbjct 160685215 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAA 160685156
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| |||| ||||| || || || |||||| | |||| | || ||||| || ||
Sbjct 160685155 AGAGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGA 160685096
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|||||||||||||| |||||| || | | || | ||||| | ||||| |||
Sbjct 160685095 ATGCCTTCTTTGTCTTGGATTTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACT 160685036
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|| | ||| | ||||| ||||||| |||||| || ||||| |||||
Sbjct 160685035 TCTAGAGTAATTGTCTTCCCGGTCAGTGTTTTCACAAATATCTGCAT 160684989
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| ||||| | ||| || || | || ||||| ||||| ||||||||||| |
Sbjct 160683847 CCCCCTCTCAAACGGAGAACCAAGTGCAGAGTGGATTCCTTTTGAATGTTGTAATCTGAC 160683788
Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
| || | || | || || || ||||| ||||| |||||| | ||| || || || ||
Sbjct 160683787 AGGGTTCGTCCA-TCCTCCAGCTGTTTGCCAGCGAAGATCAACCTTTGTTGGTCAGGGGG 160683729
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
||||||||||| || ||||| ||| | | || | ||||| | || || ||
Sbjct 160683728 AATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTCTCAATTGTGTCACTTGGCTCAAC 160683669
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||||| || | ||||| || || | ||||| || ||||| |||||
Sbjct 160683668 TTCAAGTGTGATGGTCTTCCCAGTGAGAGTTTTCACAAATATCTGCAT 160683621
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | |||||| || | || || ||||| || |||||||| || |
Sbjct 160684075 CCACCTCTGAGACGAAGAACTAAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGAC 160684016
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || || ||||| || || ||||||||| | |||| | ||||| || || ||
Sbjct 160684015 AGGGTTCTGCCATCTTCCAGCTGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 160683956
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| ||||||||||| |||||| |||| | || | ||||| | || || ||
Sbjct 160683955 ATACCTTCTTTGTCTTGGATTTTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACC 160683896
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| ||| | ||||| || |||| || || || ||||| |||||
Sbjct 160683895 TCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATCTGCAT 160683849
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243
||| |||| | ||| | || || || | |||||||| || || || || || ||
Sbjct 160684304 GCCACCTCTGAGACGAAGGACCAAGTGCAGAGTAGATTCCTTCTGAATATTATAGTCTGA 160684245
Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303
|| || || ||||| | |||||| |||||| | |||| | || ||||| || ||
Sbjct 160684244 CAGGGTTCTTCCATCTTCCAATTGTTTGCCAGCAAATATCAATCTCTGTTGATCAGGGGG 160684185
Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363
|||||||| ||||| ||||| |||| | || | ||||| | || || ||
Sbjct 160684184 AATGCCTTCCTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTTGGCTCAAC 160684125
Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
||||| ||| | ||||| || |||| || || || |||||||||||
Sbjct 160684124 TTCAAGAGTAATTGTCTTCCCTGTCAGGGTCTTCACAAATATTTGCAT 160684077
>seq3
Length=181146889
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| ||||| || || || ||||| || | | |||| | ||||| || || || |||
Sbjct 29377060 GTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 29377119
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| |||||| | || || || ||||| ||||||||||| || ||| ||| |||
Sbjct 29377120 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTTTGATTTC 29377179
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | ||| | ||||| | || ||||| || | || | |||||||| ||||| |||
Sbjct 29377180 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGTCAAAGTT 29377239
Query 137395 TTTACGAATATTTGCAT 137411
|||||||| || |||||
Sbjct 29377240 TTTACGAAGATCTGCAT 29377256
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
||||| ||||| || || ||||| || | | |||| ||||| || || || ||
Sbjct 29378483 GTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCATCTTCCAGCTGCTTGCCG 29378542
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| |||||| | ||| || || ||||| |||||||||||||| ||| ||| |||
Sbjct 29378543 GCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378602
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | ||| | ||||| | | ||||| || | || | |||||||| ||||| |||
Sbjct 29378603 ACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAGTT 29378662
Query 137395 TTTACGAATATTTGCAT 137411
||||| || || |||||
Sbjct 29378663 TTTACAAAGATCTGCAT 29378679
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 137208 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 137267
||||| || ||||| || || || |||||||| | | |||| | ||||| || ||
Sbjct 29378932 ATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTG 29378991
Query 137268 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 137327
|| || ||| |||||| | ||||| || ||||| |||||||||||||| || ||
Sbjct 29378992 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTT 29379051
Query 137328 TTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 137387
| ||| | | || | ||||| | || ||||| || | || | |||||||| ||
Sbjct 29379052 TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGT 29379111
Query 137388 CAATGTTTTTACGAATATTTGCAT 137411
|| ||||| || || || |||||
Sbjct 29379112 CAGGGTTTTCACAAAGATCTGCAT 29379135
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| ||||| || || || ||||| || | | |||| ||||| || || || ||
Sbjct 29378711 GTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCATCTTCCAGCTGCTTGCCG 29378770
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| |||||| | || || || ||||| |||||||||||||| ||| ||| |||
Sbjct 29378771 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATTTC 29378830
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | ||| | ||||| | || ||||| || | || | |||||||| |||| |||
Sbjct 29378831 ACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGTCAGGGTT 29378890
Query 137395 TTTACGAATATTTGCATA 137412
||||| || || ||||||
Sbjct 29378891 TTTACAAAGATCTGCATA 29378908
>seq2
Length=179946965
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274
|| ||||| || || || ||||| || || ||| || ||||| ||||| ||||||
Sbjct 133020331 GTGGATTCCTTCTGAATATTGTAGTCAGACAGTGTTCTGCCATCTTCCAGTTGCTTACCA 133020272
Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334
||| | || | | ||||| || || || |||||||||||||| ||||| ||||
Sbjct 133020271 GCAAAAATTAATCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTT 133020212
Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394
| | ||| | ||||| | ||||| || |||| || | ||||| || || |||||
Sbjct 133020211 ACATTTTCAATTGTGTCACTTGGTTCAACCTCAAGGGTAATTGTCTTCCCAGTTAATGTC 133020152
Query 137395 TTTACGAATATTTGCAT 137411
|| || |||||||||||
Sbjct 133020151 TTGACAAATATTTGCAT 133020135
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244
|| |||| | ||| | |||||| || | || |||||||| || ||||| || || |
Sbjct 133020133 CCACCTCTCAGACGGAGAACTAAGTGCAAGGTGGATTCTTTCTGGATGTTATAGTCTGAC 133020074
Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304
| || | ||||| ||||| || |||||| | |||| | ||||| || || ||
Sbjct 133020073 AGGGTTCGGCCATCTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGGTCAGGGGGA 133020014
Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364
|| |||||||| || ||||||| || | | ||| | ||||| | || || |||
Sbjct 133020013 ATACCTTCTTTATCCTGAATTTTTGCCTTAACATTTTCAATTGTGTCACTTGGCTCAACT 133019954
Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
|||| || | || || || || || || || || |||||||||||
Sbjct 133019953 TCAAGGGTAATGGTTTTACCAGTTAAGGTCTTGACAAATATTTGCAT 133019907
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 137194 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 137253
||||||| || | || | || |||||||| ||||||||||| || | ||||
Sbjct 133020580 AAACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGA 133020521
Query 137254 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 137313
||||| || || || |||||| |||||| | || || || ||||| || |||||
Sbjct 133020520 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCC 133020461
Query 137314 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTC 137373
|| || |||||| |||| | || | ||||| |||| || ||||||| ||
Sbjct 133020460 TTATCCTGGATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTA 133020401
Query 137374 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411
| ||||| || || || || || || ||||| |||||
Sbjct 133020400 ATGGTCTTCCCAGTTAAGGTCTTCACAAATATCTGCAT 133020363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 487884264075600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |