Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq10 109 1e-18 seq2 89.7 9e-13 >seq10 Length=136570856 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| | || ||||| | ||||| || || ||||| ||||||||||| ||| Sbjct 71939127 TGGTGGTACTACGTTTCAAAAGGAGTGGAATATTTTGACACAGTATTTTTCATACTAAGG 71939186 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 ||||| ||||| || |||| ||| | ||||||||||| || | || ||||| || | Sbjct 71939187 AAAAAATTTAACCAAATTAGTTTTTTGCACGTATATCACCACTGCACAATGTTCACACTT 71939246 Query 58505 GGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | ||| | || || || ||| |||| ||||| || Sbjct 71939247 TGGTGGATCGGAATCAAGTGGGTTGCCGGAGGACA 71939281 >seq2 Length=179946965 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/146 (73%), Gaps = 11/146 (8%) Strand=Plus/Minus Query 81643 CAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTT---------- 81692 ||||||| |||||||||||||||| || |||||||| ||||| | |||| Sbjct 133019651 CAGAGTAGATTCCTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCCAGCTGCTT 133019592 Query 81693 -CTAACAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGC 81751 | | ||||||| | ||||||||| | || | || ||||||| ||||| || || || Sbjct 133019591 ACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTGGC 133019532 Query 81752 TTTTATATTTTCAATCGTATTACCTG 81777 ||| | ||| ||||| |||| || || Sbjct 133019531 TTTGACATTCTCAATAGTATCACTTG 133019506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902191222222880