Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20laevis_20[refseq_20GCF_5F001663975.1_202016-08-09] 108,033 sequences; 2,718,433,805 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq4 120 3e-22 seq2 100 3e-16 seq1 87.8 2e-12 >seq3 Length=181146889 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| ||||||||||| | | ||| | || || ||||| Sbjct 29378932 ATGAAGGGTGGATTCCTTCTGGATATTGTAATCACAGAGGGTGCGCCCATCTTCCAGCTG 29378991 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || ||||||||| ||||| |||||||| ||||| |||||| Sbjct 29378992 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTT 29379051 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | |||| | ||||| ||||| | ||||| || || | ||| | ||| ||||| || Sbjct 29379052 TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAGT 29379111 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| || || ||||||||| Sbjct 29379112 CAGGGTTTTCACAAAGATCTGCATG 29379136 Score = 113 bits (124), Expect = 4e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | |||||| || |||||||| || ||||| ||||| |||| Sbjct 172430370 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 172430311 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| |||||| || |||||||||||||||||||| |||||| || ||||| Sbjct 172430310 TGCTCTTGCGGTTGCAGGCATCCTTGTACAGCATGTACGGAGTGCCAGTCTCAGTCTGCG 172430251 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| || ||||| |||||||| || | | |||| | | | || || |||| Sbjct 29378704 ATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGCGTGCGGCCA-TCTTCCAGCT 29378762 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || | || ||| ||||| ||||| |||||||| ||||| |||| Sbjct 29378763 GCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCT 29378822 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || || | | || | ||||| | ||||| || || | ||| | ||| ||||| | Sbjct 29378823 TTGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCCAGGGTAATGGTCTTGCCAG 29378882 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||| || |||||||| Sbjct 29378883 TCAGGGTTTTTACAAAGATCTGCAT 29378907 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| |||||||| || | | ||| | || || ||||| Sbjct 29377053 ATGCAAGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGCCCATCTTCCAGCTG 29377112 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || ||| ||||| ||||| |||||||| || || ||||| Sbjct 29377113 CTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATGCCTTCTTTATCTTGAATCTT 29377172 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | || | | || | ||||| | ||||| || || | ||| | ||| ||||| || Sbjct 29377173 TGATTTCACGTTTTCTATGGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGT 29377232 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 || |||||||||||| ||||||||| Sbjct 29377233 CAAAGTTTTTACGAAGATCTGCATG 29377257 Score = 105 bits (116), Expect = 6e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| |||||||| || | | ||| ||| | || || |||||||||| Sbjct 29378482 GGTAGACTCTTTCTGGATATTGTAGTCACAAAGGGTGCGACCA-TCTTCCAGCTGCTTGC 29378540 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || || ||||| ||||| |||||||| ||||| |||||| | Sbjct 29378541 CGGCAAAGATCAACCTTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATCTTTGATT 29378600 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | | ||| || || | ||| | ||| ||||| |||| || Sbjct 29378601 TCACATTTTCTATGGTGTCACTTGACTCTACCTCCAGGGTAATGGTCTTGCCAGTCAAAG 29378660 Query 133642 TTTTTACGAAAATCTGCATG 133661 ||||||| || ||||||||| Sbjct 29378661 TTTTTACAAAGATCTGCATG 29378680 >seq4 Length=159726490 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| || |||||||| |||||||| || | ||| | || || ||||| Sbjct 6847671 ATGCAGGGTTGATTCTTTCTGGATATTGTAGTCTGAAAGGGTGCGCCCATCTTCCAGCTG 6847612 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || | || ||||||||| |||||||| ||||| ||||| |||||| Sbjct 6847611 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCTTGGATCTT 6847552 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 | |||| | ||||| ||||| | ||||| || || | ||| | ||| ||||| || Sbjct 6847551 TGCTTTGACATTCTCAATAGTGTCACTTGGCTCTACCTCTAGGGTAATGGTCTTGCCAGT 6847492 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| || || |||||||| Sbjct 6847491 CAGGGTTTTGACAAAGATCTGCAT 6847468 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | |||||| || |||||||| || ||||| ||||| |||| Sbjct 158379681 TGTACTCCACAATCTCTGTGCACAGGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGAT 158379740 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||||||| |||||| || ||||| || ||||| || || |||||| || Sbjct 158379741 TGCTCTTGCGGTTGCAGGCATCCTTATAGAGCATATAGGGAGTGCCAGTCTC 158379792 >seq2 Length=179946965 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| ||||||||||| ||||| || | ||| ||| | || || |||||||||| Sbjct 133020560 GGTGGATTCTTTCTGTATGTTGTAGTCAGAGAGAGTGCGACCA-TCTTCCAGCTGCTTGC 133020502 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | | ||| ||||| |||||||| |||||||| || ||| ||| || Sbjct 133020501 CAGCAAAGATCAATCTCTGTTGGTCAGGAGGGATTCCTTCCTTATCCTGGATTTTTGCCT 133020442 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||| | ||| || || || | | Sbjct 133020441 TTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGGGTAATGGTCTTCCCAGTTAAGG 133020382 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 133020381 TCTTCACAAATATCTGCAT 133020363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| || ||||||||||||||||| || | || | || || ||| Sbjct 133019884 AAATGCAGGGTTGATTCTTTCTGTATATTGTAGTCAGATAGTGTTCTCCCATCTTCCAGC 133019825 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | | || ||||| || || |||||||||||||| ||| Sbjct 133019824 TGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATT 133019765 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| || || | ||||| || || | || | || || || Sbjct 133019764 TTGGCCTTGACATTCTCAATAGTATCACTTGGCTCTACCTCAAGAGTAATTGTCTTCCCT 133019705 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || || |||||||| Sbjct 133019704 GTCAGTGTTTTCACAAATATCTGCAT 133019679 >seq1 Length=219802468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||||||||||||||| || ||||| || || || || || ||| Sbjct 160684054 AAGTGCAAGGTGGACTCTTTCTGAATGTTGTAGTCTGACAGGGTTCTGCCATCTTCCAGC 160683995 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || |||| | | ||||||||| || || || ||||| ||||| ||| Sbjct 160683994 TGCTTACCAGCAAAAATCAATCTCTGCTGGTCAGGGGGAATACCTTCTTTGTCTTGGATT 160683935 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | ||||| ||||| | |||||||| || | || | || || || Sbjct 160683934 TTTGCCTTTACATTCTCAATAGTGTCACTTGGCTCCACCTCAAGAGTAATTGTCTTCCCT 160683875 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || |||||||| Sbjct 160683874 GTCAGGGTCTTCACAAATATCTGCAT 160683849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||||||||| || || |||||||| | ||| | | | || || || Sbjct 160685194 AAGTGCAAGGTGGACTCTTTTTGAATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAG 160685136 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| | | ||| || || || || |||||||| ||||| ||| Sbjct 160685135 CTGCTTCCCAGCAAAAATCAATCTCTGTTGATCAGGGGGAATGCCTTCTTTGTCTTGGAT 160685076 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | || || || || | || | || || || Sbjct 160685075 TTTTGCCTTAACATTCTCAATGGTGTCACTTGGTTCAACTTCTAGAGTAATTGTCTTCCC 160685016 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| ||||| || || |||||||| Sbjct 160685015 GGTCAGTGTTTTCACAAATATCTGCAT 160684989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482767982508920